Gene detail

Detail information of GWHGAAZE004358

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094726.1	0	PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 42 [Sesamum indicum]
COG	YP_001629527.1	2E-74	ATP-dependent RNA helicase
Swissprot	tr\|Q9SF41\|RH45_ARATH	0	DEAD-box ATP-dependent RNA helicase 45
trEMBL	tr\|B9SW84\|B9SW84_RICCO	0	Dead box ATP-dependent RNA helicase, putative {ECO:0000313\|EMBL:EEF32123.1}
TAIR10	AT3G09620.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115719123	115721843	+
GWHAAZE00000001	mRNA	115719123	115721843	+
GWHAAZE00000001	exon	115719123	115719187	+
GWHAAZE00000001	exon	115719221	115719477	+
GWHAAZE00000001	exon	115719523	115720686	+
GWHAAZE00000001	exon	115720774	115721381	+
GWHAAZE00000001	exon	115721439	115721843	+
GWHAAZE00000001	CDS	115719123	115719187	+
GWHAAZE00000001	CDS	115719221	115719477	+
GWHAAZE00000001	CDS	115719523	115720686	+
GWHAAZE00000001	CDS	115720774	115721381	+
GWHAAZE00000001	CDS	115721439	115721843	+

Transcript Sequence
>GWHTAAZE004364 ATGGAAAAGCGGAGGAGGAGAGTTCAGGAATGGCAAGAACTGAAAAGGAAGAAGGAGGAATCCGATGCTGATGATGAACCAACCATGCGTGGCAAGACCTGGACCCTGGAAGGGGAGTCTGATGATGACGATGAAGAGGGTGGTGCAAAGCCCATGGACGAGGATGAGGGTGGTGATGGGCTGCCCACAGCCATGGCTGTTGATTCTGAAAACAGGGTTGAAGCTGCACCTGTTTCTCCACAAAAAGGGGCTGAGAGTGTTATTGAGGATGATGAAATCGATCCATTGGATGCTTTCATGAATTCTATGGTAATACCCGAAGTTGAGGATGATACAAATTCTGAACTGAAGAAGGACAAAAATGTTAAAAGTAATGGGGAGCAGAAGCGTAAACAAGGGCCTAATAAATCTATGGGGAGAATCATTCCTGGCGAGGGTTCTGATTATTCGGATTATGAGGACCTTGATAATGATGAAGGGGATCCTCTGGAAGATGAAGATGACGATGAATTTATGAAAAGGGTGAAGAAGACCAAAGCCGAGAAGCTATTAGTAGTTGACCATTCAAAAATTGAATACATCCCGTTCCGAAAAAATTTCTATATTGAAGTGAAAGAAATTGCCAGGATGACCCCTGAAGAGGTTGCTGCTTACAGAAAAGAACTTGAACTGAAGATACATGGGAAGGACGTGCCAAAGCCAATTAAAACCTGGCACCAGACTGGTTTGTCGAATAAGATTTTTGAGACAATAAAGAAGCTGAACTTTGAAAAGCCAATGCCTATTCAAGCCCAGGCACTGCCGTTAATTATGAGCGGAAGAGATTGCATAGGTGTAGCCAAGACGGGCTCTGGGAAAACCCTAGCATTTGTGTTGCCAATGCTGAGGCATATAAAGGACCAGCCACCATTGATGCCCGGAGACGGGCCTATTGGACTTATAATGGCCCCTACAAGAGAGCTTGTCCAGCAGATATACAGCGACATCAAGAAGTTCACTAAGGTAATGGGTCTCAGCTGTGTGCCCGTGTATGGAGGTTCTGGCGTTGCCCAACAAATTAGTGAACTGAAAAGGGGGGTTGAGATCGTTGTCTGCACTCCAGGTAGGATGATTGACATACTCTGTACCAGCAGTGGGAAAATTACAAATCTTCGTCGGGTTACTTATTTAGTTATGGATGAAGCTGACCGAATGTTTGATATGGGATTTGAACCTCAGATCACTAGAATTGTCCAAAATACTAGACCGGATCGCCAAACGGTACTCTTCTCGGCCACCTTCCCTCGTCAGGTTGAAATCTTGGCACGCAAAGTGCTGAACAGACCCGTGGAAATACAGGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAGCGCAGCTAGTTGAGGTGAGACCTGAAAGCGATAGGTTCCTTAGACTGCTGGAATTGCTCGGAGAATGGTATGAGAAGGGAAAGATTTTGATTTTTGTCCACTCACAAGAAAAATCTATTTCGGATTTCAAGAGTAATGTGTGCAATGTCTTGATTGCGACTAGTGTTGCTGCCCGGGGTCTAGATGTAAAGGAGCTGGAGCTGGTTATCAACTTTGATGTACCGAACCACTATGAAGATTATGTTCATCGTGTTGGTCGAACGGGCCGAGCTGGACGTAAGGGCTGTGCTATCACATTCATATCTGAGGAGGATGCAAAATATGCAACAGATCTTGTGAAGGCCTTGGAACTCTCTGAGCAAGTTGTGCCCGCTGACCTGAAAGCTCTTGCTGATGGGTTCATGGCTAAGGTTAACCAGGGGCTTGAACAAGCCCATGGGACCGGTTACGGTGGAAGCGGTTTTAAATTCAATGAAGAGGAAGATGAAGTTAGGAGAGCAGCGAAGAAAGCACAGGCCAAAGAGTACGGTTTTGAGGAAGATAAGTCTGATTCTGAAGATGAGGATGAAGGGGTTCGTAAGGCAGGTGGTGACCTATCTCAGCAAGCTATTCTTGCTCAGGCTGCTGCCTTTGCCGCTGCGTCTAAAGCAAGTATGGCCTCTGTATCGGGCTCAGCCGGTCAACTTCTTCCAAATGGTGGTTTACCCGTTTCTCTGCCTGGCATTGGCACCAATGATGGGGCAGCTAGGGCAGCGGCATTGGCAGCTGCCATGAACTTGCAGCATAACTTGGCAAAGATCCAGGCTGATGCTATGCCTGAACATTATGAAGCAGAGTTGGAGATTAATGATTTCCCTCAAAATGCCCGATGGAAGGTGACCCATAAGGAAACACTGGGTCCCATTTCAGAATGGACAGGAGCTGCTATTACGACCAGGGGCCAGTATTTTCCCCCTGGAAAGATACCGGGAGTTGGGGAACAAAAGCTATACTTGTTCATTGAGGGCCCTACCGAACAATCTGTTAAGAGGGCAAAGGCAGAACTCAAACGAGTATTGGAGGACATTACAATGCAGGCATCATCACTTCCAGGTTCAGCCCAACCAGGCCGATACTCGGTTGTATGA

Network for GWHGAAZE004358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	261	432	1.10E-49
PF00271.32	Helicase_C	492	549	4.70E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12811	DDX46, PRP5	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.718
	SRR3591706	second leaf	15.663
	SRR3591707	mature leaf	14.615
	SRR3591708	Shoot apex	21.853
	SRR3591709	Stem	19.481
	SRR3591710	White floral bud	20.583
	SRR3591711	White flower	26.085
	SRR3591712	Green floral bud	20.000
	SRR3591713	Yellow flower	18.402
SRP173429	SRR8316895	Juvenile bud stage	15.723
	SRR8316896	Juvenile bud stage	21.925
	SRR8316897	Juvenile bud stage	8.932
	SRR8316894	Third green stage	10.815
	SRR8316900	Third green stage	25.058
	SRR8316901	Third green stage	23.056
	SRR8316898	Complete white stage	4.886
	SRR8316899	Complete white stage	20.909
	SRR8316903	Complete white stage	18.228
	SRR8316902	Silver flowering stage	8.753
	SRR8316904	Silver flowering stage	14.954
	SRR8316905	Silver flowering stage	7.250
	SRR8316906	Gold flowering stage	18.951
	SRR8316907	Gold flowering stage	20.426
	SRR8316908	Gold flowering stage	19.957
SRP132670	SRR6706286	Control	35.744
	SRR6706287	Light intensity 50%	32.863
	SRR6706288	Light intensity 20%	32.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.422
	CNS0095593	Slightly white alabastrum(diploid) 2	20.063
	CNS0095594	Slightly white alabastrum(diploid) 3	19.790
	CNS0095595	Whole white alabastrum(diploid) 2	16.154
	CNS0095596	Whole white alabastrum(diploid) 3	16.335
	CNS0095597	Whole white alabastrum(diploid) 4	16.654
	CNS0095598	Silvery flower (diploied) 1	20.939
	CNS0095599	Silvery flower (diploied) 2	20.609
	CNS0095600	Silvery flower (diploied) 3	32.492
	CNS0095601	Golden flower (diploid) 1	18.507
	CNS0095602	Golden flower (diploid) 2	32.132
	CNS0095603	Golden flower (diploid) 3	32.676
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.862
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.499
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.914
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.030
	CNS0095610	Silvery flower (tetraploid) 1	40.721
	CNS0095611	Silvery flower (tetraploid) 2	36.068
	CNS0095612	Silvery flower (tetraploid) 3	26.034
	CNS0095613	Golden flower (tetraploid) 1	20.872
	CNS0095614	Golden flower (tetraploid) 2	36.781
	CNS0095615	Golden flower (tetraploid) 3	27.602
CRA001975	CRR073297	Stem 1	40.260
	CRR073298	Stem 2	37.051
	CRR073299	Stem 3	37.368
	CRR073300	Leaf 1	39.218
	CRR073301	Leaf 2	38.931
	CRR073302	Leaf 3	24.770
	CRR073303	Juvenile bud 1	35.748
	CRR073304	Juvenile bud 2	26.884
	CRR073305	Juvenile bud 3	48.777
	CRR073306	Third green 1	19.178
	CRR073307	Third green 2	14.837
	CRR073308	Third green 3	19.445
	CRR073309	Second white 1	11.959
	CRR073310	Second white 2	16.929
	CRR073311	Second white 3	15.381
	CRR073312	Silver flowering 1	16.953
	CRR073313	Silver flowering 2	17.328
	CRR073314	Silver flowering 3	17.603
	CRR073315	Gold flowering 1	11.896
	CRR073316	Gold flowering 2	20.774
	CRR073317	Gold flowering 3	8.318
	CRR073318	Tawny withering 1	30.875
	CRR073319	Tawny withering 2	28.577
	CRR073320	Tawny withering 3	26.109