Gene detail

Detail information of GWHGAAZE004350

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270834.1	4.2192E-123	PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic [Vitis vinifera]
COG	YP_006982862.1	1E-21	ribose 5-phosphate isomerase
Swissprot	tr\|Q9FI13\|RPI4_ARATH	3E-94	Probable ribose-5-phosphate isomerase 4, chloroplastic (Precursor)
trEMBL	tr\|B9I0V6\|B9I0V6_POPTR	2E-118	Ribose 5-phosphate isomerase-related family protein {ECO:0000313\|EMBL:EEE97683.2}
TAIR10	AT5G44520.1	2E-76	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115635514	115640212	+
GWHAAZE00000001	mRNA	115635514	115640212	+
GWHAAZE00000001	exon	115635514	115635690	+
GWHAAZE00000001	exon	115637377	115637504	+
GWHAAZE00000001	exon	115638082	115638151	+
GWHAAZE00000001	exon	115638504	115638608	+
GWHAAZE00000001	exon	115639000	115639095	+
GWHAAZE00000001	exon	115639193	115639249	+
GWHAAZE00000001	exon	115639758	115639875	+
GWHAAZE00000001	exon	115639962	115640072	+
GWHAAZE00000001	exon	115640199	115640212	+
GWHAAZE00000001	CDS	115635514	115635690	+
GWHAAZE00000001	CDS	115637377	115637504	+
GWHAAZE00000001	CDS	115638082	115638151	+
GWHAAZE00000001	CDS	115638504	115638608	+
GWHAAZE00000001	CDS	115639000	115639095	+
GWHAAZE00000001	CDS	115639193	115639249	+
GWHAAZE00000001	CDS	115639758	115639875	+
GWHAAZE00000001	CDS	115639962	115640072	+
GWHAAZE00000001	CDS	115640199	115640212	+

Transcript Sequence
>GWHTAAZE004356 ATGCTCTCCTTGTCTCCTCCATCTTACTATTCGCACTACATTCACAGCAAGGGTTTGGAATCGACAAGAAGAAGAAGGCGAACGAGACTGAGTAGTAGTAGTAGTTCGAATATGATGGTCACTCGCTCATGCCACATTGACAGCAAAACCGGTCTCCTCCAAGCAGCCCACCACACTGTGGATACATACATTAAAAGTGGCATGGTGATTGGGTTAGGATCTGGGCATGGTTCTGGATTGGCAATACAGTATTTAGGCCATCAACTTCGTACTGGTGCAATAAAAGATATAGTTGGAGTACCGACATCTGTTGATTGCGCGAGTGAAGCATCAAAGGCAGGAATTCCATTGGATCAGTACCAAGATAGTTCTCAAATTGATTTTGCATTTAATGACGCTGACATTATAGAAGAAGGAACACTTAGTGCAATAATTGGGCGTCAGAGATGGCAGGGCGATGAGTCTATGATTGAAGAGAAGACTATTTTAAAAGCTGCCAAGATGCTTGTATTCATGATCACAGGAAAGCAGTATAAAGCCTTTCTAGATGGCTCAATTCCAGTTTTAGTTAAACCCTTCGGTTGGATGGAAACTGCAGAAGAGATAGAGGACTTGTTTCTCGGTGATGCTGAGGTGTGGAGGAGATCATCTGTAGGGCATTCGGATCCACTAGGAGGCGACTTCCCACTGGTCACAAGAGAGGGACATAATGTTCTTGATCTCATATTTACATCTCCTATATCAAACCTTGTTGAAGTGGGAGAAAGTCTTGATAAAATTGAGGGGGTTGTAGCCCATGGAGTCATCTCTAAATTCCCGTTAGTTCCTTCTTCCATTCACTCCTCTTGCATCCTTTCACATAATGTACGGCTGTGA

Network for GWHGAAZE004350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06026.15	Rib_5-P_isom_A	98	271	1.50E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01807	rpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0009052	biological_process	pentose-phosphate shunt, non-oxidative branch
GO:0004751	molecular_function	ribose-5-phosphate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.977
	SRR3591706	second leaf	26.372
	SRR3591707	mature leaf	22.268
	SRR3591708	Shoot apex	13.865
	SRR3591709	Stem	1.795
	SRR3591710	White floral bud	0.914
	SRR3591711	White flower	1.124
	SRR3591712	Green floral bud	1.757
	SRR3591713	Yellow flower	0.257
SRP173429	SRR8316895	Juvenile bud stage	4.462
	SRR8316896	Juvenile bud stage	4.917
	SRR8316897	Juvenile bud stage	2.742
	SRR8316894	Third green stage	2.329
	SRR8316900	Third green stage	6.107
	SRR8316901	Third green stage	3.600
	SRR8316898	Complete white stage	0.415
	SRR8316899	Complete white stage	1.357
	SRR8316903	Complete white stage	0.484
	SRR8316902	Silver flowering stage	0.447
	SRR8316904	Silver flowering stage	0.394
	SRR8316905	Silver flowering stage	0.143
	SRR8316906	Gold flowering stage	0.424
	SRR8316907	Gold flowering stage	0.325
	SRR8316908	Gold flowering stage	0.254
SRP132670	SRR6706286	Control	4.435
	SRR6706287	Light intensity 50%	4.184
	SRR6706288	Light intensity 20%	5.249
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.752
	CNS0095593	Slightly white alabastrum(diploid) 2	3.400
	CNS0095594	Slightly white alabastrum(diploid) 3	3.789
	CNS0095595	Whole white alabastrum(diploid) 2	4.241
	CNS0095596	Whole white alabastrum(diploid) 3	4.359
	CNS0095597	Whole white alabastrum(diploid) 4	2.407
	CNS0095598	Silvery flower (diploied) 1	9.226
	CNS0095599	Silvery flower (diploied) 2	7.406
	CNS0095600	Silvery flower (diploied) 3	1.347
	CNS0095601	Golden flower (diploid) 1	6.200
	CNS0095602	Golden flower (diploid) 2	2.384
	CNS0095603	Golden flower (diploid) 3	2.333
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.782
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.780
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.964
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.620
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.670
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.827
	CNS0095612	Silvery flower (tetraploid) 3	0.537
	CNS0095613	Golden flower (tetraploid) 1	0.202
	CNS0095614	Golden flower (tetraploid) 2	0.528
	CNS0095615	Golden flower (tetraploid) 3	0.204
CRA001975	CRR073297	Stem 1	8.294
	CRR073298	Stem 2	6.848
	CRR073299	Stem 3	7.446
	CRR073300	Leaf 1	4.957
	CRR073301	Leaf 2	3.745
	CRR073302	Leaf 3	3.535
	CRR073303	Juvenile bud 1	1.481
	CRR073304	Juvenile bud 2	1.998
	CRR073305	Juvenile bud 3	0.580
	CRR073306	Third green 1	0.475
	CRR073307	Third green 2	0.520
	CRR073308	Third green 3	0.821
	CRR073309	Second white 1	0.686
	CRR073310	Second white 2	0.160
	CRR073311	Second white 3	0.183
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.342
	CRR073314	Silver flowering 3	0.290
	CRR073315	Gold flowering 1	29.956
	CRR073316	Gold flowering 2	37.601
	CRR073317	Gold flowering 3	15.653
	CRR073318	Tawny withering 1	2.336
	CRR073319	Tawny withering 2	3.727
	CRR073320	Tawny withering 3	3.599