Gene detail

Detail information of GWHGAAZE004321

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010648522.1	PREDICTED: probable splicing factor 3A subunit 1 [Vitis vinifera]
Swissprot	tr\|Q8RXF1\|SF3A1_ARATH	Probable splicing factor 3A subunit 1
trEMBL	tr\|F6HFR3\|F6HFR3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50994.1}
TAIR10	AT1G14650.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115096801	115099803	+
GWHAAZE00000001	mRNA	115096801	115099803	+
GWHAAZE00000001	exon	115096801	115098969	+
GWHAAZE00000001	exon	115099537	115099803	+
GWHAAZE00000001	CDS	115096801	115098969	+
GWHAAZE00000001	CDS	115099537	115099803	+

Transcript Sequence
>GWHTAAZE004327 ATGTTGGGTTCGTTGCCCATATTGCCCCTTCCAGCACCACCCTCCGATGGGAATATTGGGCCTCTCCCTCCCTCTCAAGTTCAGGAAGAACCCAAGGATGAGTACTCACAAAAGTCTGAAGAGGAAGCTAACAATTCAAACTCGGCTCCGGCTTCGGTTGCCACTCACACAAGAACAATTGGAATTATCCATCCTCCTCCCGACATTCGGAACATTGTCGATAAAACTGCAACTTTTGTGGCCAAGAATGGACCCGAGTTTGAGAGAAGGATTATGGCTAACAATGCCACAAATGCCAAGTTCAATTTCTTGAACCCTTCGGATCCATACCATGCATATTACCAGCACCGTCTCTCCGAATTCCGTAATCTGAATCAATCCTCTGGCCAGCAGCCATCTCAGCCATCAGATTTATCAGCTGCTGATTCAGCCCTTTCTGCCCCTGCTGCTGATGACAATGATGCAGGGGTGAAGCCTGACCCTTCAGCGCAGTTTAGACCTGTGCGTAAAGTTCTTGAGCCCCCAGAGTTGGAGCAATACACTGTTCGTCTTCCTGAGGGGATAACAGGGGAAGAATTGGATATAATTAAGCTCACAGCGCAGTTTGTGGCAAGGAATGGTAAGTCGTTTTTGACTGGGCTAACGAGTAGAGAGATTAACAATCCTCAGTTTCATTTTTTGAAGCCTACACACAGCATGTTCATGTTTTTCACATCACTTGCGGATGCGTATTCGAAAGTGTTGATGCCTCCCAAGGGATTGACTGATAAGCTAAAGAAGAGTGTTACCGATATGACCACGATACTTGAAAGGTGTTTGCACAGGCTGGAGTGGGAGCGTTCTCAAGAGCAAGCAAGGCAGAAAGCCGAGGACGAGATAGAGCAGGAACGTGTGCAGATGGCTATGATTGACTGGCACGATTTTGTTGTTGTTGAGACTATAGACTTTGTAGACGACGAGGATGAAGATCTACCACCTCCAATGACACTCGAGGAGGTTATAAGGAGGAGCAAGGTGTCAGCAATGGAGGAAGAAGAGGTTGTGGAGCCTGGAAAGGAAGTAGAAATGGAGATGGATGAAGAAGAGGTGCAGCTTGTTGAAGAAGGTATGCGGGCCGCTAGTCTTGAAGAGAATGGGGATGATGATAGGAAAAATGAAACCAAAGCAGCTCCAGAGGAACAAGAACCGCCTATGAGAATCGTCAAGAATTGGAAGCGGCCAGAGGAGAGGACCCCTGCAGAAAGAGACCCGACTAAATACGTTGTTTCCCCAATTACCGGCGAGCTAATTCTCATCAACGAGATGTCTGAACATATGAGGATTTCTCTTATTGATCCCAAGTACAAGGAACAAAAGGAGAGGATGTTTGCTAAGATTCGAGAGACTACTCTTGCTCAGGATGACGAAATCTCGAGAAATATTGTGGGACTTGCACGGACCCGACCAGATATTTTTGGTACCACTGAGGAAGAAGTTTCTAATGCGGTAAAGGCCGAGATTGAAAAGAAGAAAGATGAACAACCAAAGCAGGTCATATGGGATGGCCACACCGGTAGCATTGGTCGAACTGCAACCCAAGCCATGTCTCAGAATGCTAATGGAGAGGACCAGTATGATGCTGCCAACAATGATGGACGGAATCTTCCGGGTCCAGCGGCTCCTCCTCCTAGGCCTGGTATTCCATCGGTTCGGCCACTCCCTCCACCACCGGGGTTGGCTTTGAATCTTCCTCGGGTACCGCCAAATACAGGCCAGTATTCGGCACCAACTAGTAGCGGGGTCCTTGTGCCGCCACCCAGACCGCCGGTTGGGGCAATGCTTCCCTCGATTCGGCCTCCGCCTCCCCCAATGCAAATGGGTTATGGACAGCAGCCTCTTATGGTGAATCGACCACCCCCAATGCCGCCATCTATGTCTATGAATCCACCTAGTATTCCTGTGCCACCGCCTCCTGGATCTCAGTTTACGCCTCTGGCAGCCCCACGGCCTTTTATTACCATGCCTCAACATGGCATGCATATGGTTCCACCACCGCCTTTACCTGGAATGCCACCACCACCTCCACCGGAAGAAGCTCCTCCTCCGCTTCCGGAGGAACCTGAGCCAAAGAGGCAAAGGCATGATGATTCATTGCTGATTCCCGAGGACCAGTTCTTGGCTCAACACCCGGGACCTGTTCGGATTTCTGTGTCTGTGCCGAATGTTGATGAAGGAAACCTTAAAGGGCAAGTTCTGGAGATCACAGTACAATCCTTATCGGAAACCGTTGGTAGTCTGAAGGAGAAGATTGCAGGAGAGATTCAGCTTCCTTCAAACAAACAAAAACTGAGTGGAAAAGCCGGTTTCCTTAAAGACAATCTGTCACTCGCATACTACAACGTTGCTGGAGAAACACTTTCACTTTCTTTGAGGGAACGTGGTGGTAGAAAGAGATAA

Network for GWHGAAZE004321

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01805.21	Surp	70	121	4.20E-22
PF01805.21	Surp	193	244	1.90E-17
PF12230.9	PRP21_like_P	262	479	4.00E-57
PF00240.24	ubiquitin	740	805	5.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12825	SF3A1, SAP114	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0003723	molecular_function	RNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.393
	SRR3591706	second leaf	26.186
	SRR3591707	mature leaf	29.517
	SRR3591708	Shoot apex	37.843
	SRR3591709	Stem	42.960
	SRR3591710	White floral bud	48.550
	SRR3591711	White flower	60.015
	SRR3591712	Green floral bud	49.362
	SRR3591713	Yellow flower	45.903
SRP173429	SRR8316895	Juvenile bud stage	30.533
	SRR8316896	Juvenile bud stage	36.787
	SRR8316897	Juvenile bud stage	16.596
	SRR8316894	Third green stage	15.701
	SRR8316900	Third green stage	44.748
	SRR8316901	Third green stage	44.608
	SRR8316898	Complete white stage	14.140
	SRR8316899	Complete white stage	54.297
	SRR8316903	Complete white stage	35.919
	SRR8316902	Silver flowering stage	16.376
	SRR8316904	Silver flowering stage	23.467
	SRR8316905	Silver flowering stage	11.710
	SRR8316906	Gold flowering stage	39.450
	SRR8316907	Gold flowering stage	45.910
	SRR8316908	Gold flowering stage	45.661
SRP132670	SRR6706286	Control	50.522
	SRR6706287	Light intensity 50%	50.354
	SRR6706288	Light intensity 20%	47.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.143
	CNS0095593	Slightly white alabastrum(diploid) 2	23.486
	CNS0095594	Slightly white alabastrum(diploid) 3	22.598
	CNS0095595	Whole white alabastrum(diploid) 2	23.068
	CNS0095596	Whole white alabastrum(diploid) 3	19.368
	CNS0095597	Whole white alabastrum(diploid) 4	22.434
	CNS0095598	Silvery flower (diploied) 1	41.988
	CNS0095599	Silvery flower (diploied) 2	34.325
	CNS0095600	Silvery flower (diploied) 3	57.288
	CNS0095601	Golden flower (diploid) 1	33.121
	CNS0095602	Golden flower (diploid) 2	58.192
	CNS0095603	Golden flower (diploid) 3	55.726
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.964
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.630
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.598
	CNS0095610	Silvery flower (tetraploid) 1	57.257
	CNS0095611	Silvery flower (tetraploid) 2	55.598
	CNS0095612	Silvery flower (tetraploid) 3	46.578
	CNS0095613	Golden flower (tetraploid) 1	34.023
	CNS0095614	Golden flower (tetraploid) 2	48.946
	CNS0095615	Golden flower (tetraploid) 3	50.396
CRA001975	CRR073297	Stem 1	57.129
	CRR073298	Stem 2	56.644
	CRR073299	Stem 3	49.837
	CRR073300	Leaf 1	62.272
	CRR073301	Leaf 2	56.497
	CRR073302	Leaf 3	36.463
	CRR073303	Juvenile bud 1	44.152
	CRR073304	Juvenile bud 2	40.878
	CRR073305	Juvenile bud 3	77.683
	CRR073306	Third green 1	33.023
	CRR073307	Third green 2	25.563
	CRR073308	Third green 3	30.340
	CRR073309	Second white 1	41.345
	CRR073310	Second white 2	33.631
	CRR073311	Second white 3	39.866
	CRR073312	Silver flowering 1	45.135
	CRR073313	Silver flowering 2	51.717
	CRR073314	Silver flowering 3	45.688
	CRR073315	Gold flowering 1	28.020
	CRR073316	Gold flowering 2	35.637
	CRR073317	Gold flowering 3	37.480
	CRR073318	Tawny withering 1	40.327
	CRR073319	Tawny withering 2	29.539
	CRR073320	Tawny withering 3	34.046