Gene detail

Detail information of GWHGAAZE004300

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008464646.1	1.196E-119	PREDICTED: choline-phosphate cytidylyltransferase 2-like [Cucumis melo]
COG	YP_004672440.1	0.000005	hypothetical protein SNE_A20720
Swissprot	tr\|Q9ZV56\|CCT1_ARATH	9E-113	Choline-phosphate cytidylyltransferase 1
trEMBL	tr\|K7LBV6\|K7LBV6_SOYBN	1E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05640.2}
TAIR10	AT2G32260.1	4E-88	phosphorylcholine cytidylyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114809511	114813518	+
GWHAAZE00000001	mRNA	114809511	114813518	+
GWHAAZE00000001	exon	114809511	114809551	+
GWHAAZE00000001	exon	114810396	114810491	+
GWHAAZE00000001	exon	114811079	114811121	+
GWHAAZE00000001	exon	114811635	114811790	+
GWHAAZE00000001	exon	114811895	114811975	+
GWHAAZE00000001	exon	114812704	114812814	+
GWHAAZE00000001	exon	114813360	114813518	+
GWHAAZE00000001	CDS	114809511	114809551	+
GWHAAZE00000001	CDS	114810396	114810491	+
GWHAAZE00000001	CDS	114811079	114811121	+
GWHAAZE00000001	CDS	114811635	114811790	+
GWHAAZE00000001	CDS	114811895	114811975	+
GWHAAZE00000001	CDS	114812704	114812814	+
GWHAAZE00000001	CDS	114813360	114813518	+

Transcript Sequence
>GWHTAAZE004306 ATGACTGACAAGGAGCGCTATGAATCTCTTCGCCACTGCAGATGGGTTGATGAGGTTATTCCCGATGCACCATGGGTGGTTACACTAGACTTCCTTGACCAACATCAGATTGATTTTGTGGCACACGATTCTCTTCCTTATGCTGATACAAGTGGGGCTGGCAAAGATGTTTATGAGTTTGTCAAGTCCATTGGAAGATTTAAGGAGACAAAACGAACTGAAGGGATCTCTACATCGGATTTAATAATGAGGATTGTCAAAGACTATAATGAGTATGTGATGCGAAACTTGGACCGAGGATACTCTAGAAAGGAACTTGGTGTTAGTTATGTGAAGGAAAAAAGGCTGAGAGTAAACATGGGCTTAAAAAAGTTGCGTGAAAAAGTGAAGAAACAGCAAGAAATAGTGGGAGAAACGATACAAACTGTTGCAAAAACAGCTGGTATGCGTCGTAACATATGGGTGGAGAATGCTGATCGTATGGTTGCAGGTTTTCTTGAGATGTTCGAAGAAGGTTGCCATAAAATGGGAACTGCCATTAGAGACCGGATTCAAGAACAGCTGATGGCGAAGGCGAATATGAAGGGACTTGTGTACGATGACAATGGAGAAGAAGATGATGATGACGAGTATTATTATTATGAAGACAGCACAGAAGAAGAATACTCTGAGGAGGACGATGAATGA

Network for GWHGAAZE004300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01467.27	CTP_transf_like	2	83	5.60E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00968	PCYT1	Metabolic pathways	map01100
		Glycerophospholipid metabolism	map00564
		Phosphonate and phosphinate metabolism	map00440

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	151.836
	SRR3591706	second leaf	74.450
	SRR3591707	mature leaf	75.392
	SRR3591708	Shoot apex	110.098
	SRR3591709	Stem	182.203
	SRR3591710	White floral bud	119.628
	SRR3591711	White flower	144.280
	SRR3591712	Green floral bud	119.461
	SRR3591713	Yellow flower	154.628
SRP173429	SRR8316895	Juvenile bud stage	72.027
	SRR8316896	Juvenile bud stage	105.156
	SRR8316897	Juvenile bud stage	45.542
	SRR8316894	Third green stage	45.243
	SRR8316900	Third green stage	129.923
	SRR8316901	Third green stage	132.201
	SRR8316898	Complete white stage	67.011
	SRR8316899	Complete white stage	186.548
	SRR8316903	Complete white stage	108.374
	SRR8316902	Silver flowering stage	72.260
	SRR8316904	Silver flowering stage	98.703
	SRR8316905	Silver flowering stage	47.383
	SRR8316906	Gold flowering stage	140.792
	SRR8316907	Gold flowering stage	156.208
	SRR8316908	Gold flowering stage	156.713
SRP132670	SRR6706286	Control	82.492
	SRR6706287	Light intensity 50%	90.343
	SRR6706288	Light intensity 20%	95.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	76.693
	CNS0095593	Slightly white alabastrum(diploid) 2	85.856
	CNS0095594	Slightly white alabastrum(diploid) 3	72.566
	CNS0095595	Whole white alabastrum(diploid) 2	66.650
	CNS0095596	Whole white alabastrum(diploid) 3	68.455
	CNS0095597	Whole white alabastrum(diploid) 4	70.656
	CNS0095598	Silvery flower (diploied) 1	94.210
	CNS0095599	Silvery flower (diploied) 2	97.483
	CNS0095600	Silvery flower (diploied) 3	99.570
	CNS0095601	Golden flower (diploid) 1	109.962
	CNS0095602	Golden flower (diploid) 2	83.922
	CNS0095603	Golden flower (diploid) 3	90.071
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.776
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	97.201
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.494
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.373
	CNS0095610	Silvery flower (tetraploid) 1	114.403
	CNS0095611	Silvery flower (tetraploid) 2	103.257
	CNS0095612	Silvery flower (tetraploid) 3	75.947
	CNS0095613	Golden flower (tetraploid) 1	98.443
	CNS0095614	Golden flower (tetraploid) 2	105.858
	CNS0095615	Golden flower (tetraploid) 3	75.640
CRA001975	CRR073297	Stem 1	67.220
	CRR073298	Stem 2	67.526
	CRR073299	Stem 3	52.516
	CRR073300	Leaf 1	75.936
	CRR073301	Leaf 2	82.858
	CRR073302	Leaf 3	63.316
	CRR073303	Juvenile bud 1	77.926
	CRR073304	Juvenile bud 2	54.051
	CRR073305	Juvenile bud 3	62.660
	CRR073306	Third green 1	36.195
	CRR073307	Third green 2	37.755
	CRR073308	Third green 3	38.824
	CRR073309	Second white 1	35.793
	CRR073310	Second white 2	44.387
	CRR073311	Second white 3	36.708
	CRR073312	Silver flowering 1	35.035
	CRR073313	Silver flowering 2	21.368
	CRR073314	Silver flowering 3	25.627
	CRR073315	Gold flowering 1	24.235
	CRR073316	Gold flowering 2	33.354
	CRR073317	Gold flowering 3	13.830
	CRR073318	Tawny withering 1	80.355
	CRR073319	Tawny withering 2	84.742
	CRR073320	Tawny withering 3	83.010