Gene detail

Detail information of GWHGAAZE004284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP25084.1	8.7248E-167	hypothetical protein JCGZ_22619 [Jatropha curcas]
COG	YP_005842152.1	4E-62	proteasome subunit Alpha
Swissprot	tr\|O23708\|PSA2A_ARATH	5E-161	Proteasome subunit alpha type-2-A
trEMBL	tr\|A0A067JZW5\|A0A067JZW5_JATCU	3E-167	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT1G16470.2	5E-127	proteasome subunit PAB1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114554873	114559029	+
GWHAAZE00000001	mRNA	114554873	114559029	+
GWHAAZE00000001	exon	114554873	114554940	+
GWHAAZE00000001	exon	114555136	114555212	+
GWHAAZE00000001	exon	114555731	114555795	+
GWHAAZE00000001	exon	114556000	114556046	+
GWHAAZE00000001	exon	114556331	114556406	+
GWHAAZE00000001	exon	114557239	114557306	+
GWHAAZE00000001	exon	114557520	114557589	+
GWHAAZE00000001	exon	114557863	114557948	+
GWHAAZE00000001	exon	114558608	114558670	+
GWHAAZE00000001	exon	114558782	114558847	+
GWHAAZE00000001	exon	114558981	114559029	+
GWHAAZE00000001	CDS	114554873	114554940	+
GWHAAZE00000001	CDS	114555136	114555212	+
GWHAAZE00000001	CDS	114555731	114555795	+
GWHAAZE00000001	CDS	114556000	114556046	+
GWHAAZE00000001	CDS	114556331	114556406	+
GWHAAZE00000001	CDS	114557239	114557306	+
GWHAAZE00000001	CDS	114557520	114557589	+
GWHAAZE00000001	CDS	114557863	114557948	+
GWHAAZE00000001	CDS	114558608	114558670	+
GWHAAZE00000001	CDS	114558782	114558847	+
GWHAAZE00000001	CDS	114558981	114559029	+

Transcript Sequence
>GWHTAAZE004290 ACTCTTTCTAGTTTAATTCAACACACAATGGGTGATAGCCAGTACTCTTTCTCCCTCACGACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGCAGTTGGATCTGGTCAAACATCTTTAGGGATTAAAGCTGCTAATGGTGTTGTTATTGCGACAGAAAAGAAACTACCCTCTATCTTAGTTGATGAAACATCTGTGCAAAAGATTCAAATTTTGACCCCAAATATTGGAGTTGTATACAGTGGCATGGGGCCAGATTCCCGAGTTTTGGTTCGAAAAAGTAGGAAGCAGGCAGAACAATATCATCGACTATATAAAGAACCAATCCCTGTTACACAACTTGTTAGGGAAACTGCTGCTGTTATGCAAGAGTTCACACAGTCAGGTGGTGTAAGGCCTTTTGGCGTTTCACTCCTGGTTGCCGGCTTTGATGACAAGGGTCCGCAGCTGTATCAGGTTGATCCATCAGGTTCATACTTCTCGTGGAAAGCTTCAGCCATGGGAAAGAACGTGTCCAATGCTAAGACATTTCTCGAAAAGAGGTACACAGACGATATGGAACTCGATGATGCTGTACACACAGCTATTTTGACTCTGAAAGAAGGATTTGAAGGACAAATTTCTGGGAAAAACATCGAGATTGGGATAATTGGGGCTGACAAAACATTTAGAGTTCTCACGCCTGCTGAAATTGAAGACTATCTACAGGAAGTGGAGTAG

Network for GWHGAAZE004284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	15	37	7.00E-09
PF00227.27	Proteasome	40	222	1.30E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02726	PSMA2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	208.816
	SRR3591706	second leaf	86.511
	SRR3591707	mature leaf	58.458
	SRR3591708	Shoot apex	173.571
	SRR3591709	Stem	156.531
	SRR3591710	White floral bud	130.204
	SRR3591711	White flower	294.572
	SRR3591712	Green floral bud	160.968
	SRR3591713	Yellow flower	295.718
SRP173429	SRR8316895	Juvenile bud stage	105.442
	SRR8316896	Juvenile bud stage	162.753
	SRR8316897	Juvenile bud stage	77.426
	SRR8316894	Third green stage	66.817
	SRR8316900	Third green stage	211.751
	SRR8316901	Third green stage	194.176
	SRR8316898	Complete white stage	90.317
	SRR8316899	Complete white stage	206.881
	SRR8316903	Complete white stage	116.075
	SRR8316902	Silver flowering stage	100.649
	SRR8316904	Silver flowering stage	116.597
	SRR8316905	Silver flowering stage	63.447
	SRR8316906	Gold flowering stage	268.933
	SRR8316907	Gold flowering stage	269.891
	SRR8316908	Gold flowering stage	272.544
SRP132670	SRR6706286	Control	174.580
	SRR6706287	Light intensity 50%	179.967
	SRR6706288	Light intensity 20%	195.114
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	173.340
	CNS0095593	Slightly white alabastrum(diploid) 2	189.465
	CNS0095594	Slightly white alabastrum(diploid) 3	169.299
	CNS0095595	Whole white alabastrum(diploid) 2	140.820
	CNS0095596	Whole white alabastrum(diploid) 3	157.645
	CNS0095597	Whole white alabastrum(diploid) 4	121.052
	CNS0095598	Silvery flower (diploied) 1	106.534
	CNS0095599	Silvery flower (diploied) 2	135.643
	CNS0095600	Silvery flower (diploied) 3	185.338
	CNS0095601	Golden flower (diploid) 1	116.810
	CNS0095602	Golden flower (diploid) 2	154.184
	CNS0095603	Golden flower (diploid) 3	150.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	145.913
	CNS0095605	Slightly white alabastrum(tetraploid) 2	150.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	172.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.898
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	159.937
	CNS0095610	Silvery flower (tetraploid) 1	227.069
	CNS0095611	Silvery flower (tetraploid) 2	233.217
	CNS0095612	Silvery flower (tetraploid) 3	146.935
	CNS0095613	Golden flower (tetraploid) 1	200.013
	CNS0095614	Golden flower (tetraploid) 2	196.326
	CNS0095615	Golden flower (tetraploid) 3	185.044
CRA001975	CRR073297	Stem 1	112.465
	CRR073298	Stem 2	109.502
	CRR073299	Stem 3	139.001
	CRR073300	Leaf 1	119.648
	CRR073301	Leaf 2	130.969
	CRR073302	Leaf 3	162.401
	CRR073303	Juvenile bud 1	166.549
	CRR073304	Juvenile bud 2	134.033
	CRR073305	Juvenile bud 3	128.520
	CRR073306	Third green 1	68.850
	CRR073307	Third green 2	59.616
	CRR073308	Third green 3	68.086
	CRR073309	Second white 1	124.200
	CRR073310	Second white 2	101.471
	CRR073311	Second white 3	69.328
	CRR073312	Silver flowering 1	58.269
	CRR073313	Silver flowering 2	59.435
	CRR073314	Silver flowering 3	46.118
	CRR073315	Gold flowering 1	60.895
	CRR073316	Gold flowering 2	69.360
	CRR073317	Gold flowering 3	39.649
	CRR073318	Tawny withering 1	121.348
	CRR073319	Tawny withering 2	130.757
	CRR073320	Tawny withering 3	127.999