Detail information of GWHGAAZE004268


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009628933.10PREDICTED: protein argonaute 2 [Nicotiana tomentosiformis]
Swissprottr|Q9SHF3|AGO2_ARATH0Protein argonaute 2
trEMBLtr|A0A067JWB9|A0A067JWB9_JATCU0Protein argonaute {ECO:0000256|RuleBase:RU361178}
TAIR10AT1G31280.10Argonaute family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene114244507114248469-
GWHAAZE00000001mRNA114244507114248469-
GWHAAZE00000001exon114244507114245953-
GWHAAZE00000001exon114246742114247328-
GWHAAZE00000001exon114247846114248469-
GWHAAZE00000001CDS114247846114248469-
GWHAAZE00000001CDS114246742114247328-
GWHAAZE00000001CDS114244507114245953-
Transcript Sequence

Network for GWHGAAZE004268

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16486.6ArgoN441811.50E-21
PF08699.11ArgoL11932412.70E-10
PF02170.23PAZ2473702.80E-20
PF02171.18Piwi5408376.30E-91
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf183.328
SRR3591706second leaf33.666
SRR3591707mature leaf21.419
SRR3591708Shoot apex75.213
SRR3591709Stem124.771
SRR3591710White floral bud45.199
SRR3591711White flower38.588
SRR3591712Green floral bud60.637
SRR3591713Yellow flower10.669
SRP173429 SRR8316895Juvenile bud stage 190.802
SRR8316896Juvenile bud stage 249.068
SRR8316897Juvenile bud stage 140.050
SRR8316894Third green stage 33.774
SRR8316900Third green stage 84.750
SRR8316901Third green stage 136.947
SRR8316898Complete white stage 21.264
SRR8316899Complete white stage 192.464
SRR8316903Complete white stage 30.939
SRR8316902Silver flowering stage22.615
SRR8316904Silver flowering stage27.344
SRR8316905Silver flowering stage17.123
SRR8316906Gold flowering stage 38.275
SRR8316907Gold flowering stage 42.663
SRR8316908Gold flowering stage 33.560
SRP132670SRR6706286Control65.450
SRR6706287Light intensity 50%76.324
SRR6706288Light intensity 20%71.854
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.912
CNS0095593Slightly white alabastrum(diploid) 258.234
CNS0095594Slightly white alabastrum(diploid) 348.281
CNS0095595Whole white alabastrum(diploid) 244.618
CNS0095596Whole white alabastrum(diploid) 319.901
CNS0095597Whole white alabastrum(diploid) 429.776
CNS0095598Silvery flower (diploied) 155.630
CNS0095599Silvery flower (diploied) 2197.618
CNS0095600Silvery flower (diploied) 3190.934
CNS0095601Golden flower (diploid) 1255.601
CNS0095602Golden flower (diploid) 2236.335
CNS0095603Golden flower (diploid) 3232.409
CNS0095604Slightly white alabastrum(tetraploid) 130.509
CNS0095605Slightly white alabastrum(tetraploid) 228.052
CNS0095606Slightly white alabastrum(tetraploid) 370.135
CNS0095607Whole white alabastrum(tetraploid) 120.787
CNS0095608Whole white alabastrum(tetraploid) 215.002
CNS0095609Whole white alabastrum(tetraploid) 346.743
CNS0095610Silvery flower (tetraploid) 124.124
CNS0095611Silvery flower (tetraploid) 237.557
CNS0095612Silvery flower (tetraploid) 322.548
CNS0095613Golden flower (tetraploid) 16.151
CNS0095614Golden flower (tetraploid) 219.113
CNS0095615Golden flower (tetraploid) 37.287
CRA001975CRR073297Stem 144.545
CRR073298Stem 243.677
CRR073299Stem 341.317
CRR073300Leaf 161.852
CRR073301Leaf 282.125
CRR073302Leaf 345.807
CRR073303Juvenile bud 149.174
CRR073304Juvenile bud 245.941
CRR073305Juvenile bud 3118.086
CRR073306Third green 120.071
CRR073307Third green 215.631
CRR073308Third green 317.574
CRR073309Second white 17.122
CRR073310Second white 27.684
CRR073311Second white 36.471
CRR073312Silver flowering 110.250
CRR073313Silver flowering 27.349
CRR073314Silver flowering 36.842
CRR073315Gold flowering 120.607
CRR073316Gold flowering 231.151
CRR073317Gold flowering 319.680
CRR073318Tawny withering 178.940
CRR073319Tawny withering 281.078
CRR073320Tawny withering 3102.246