Gene detail

Detail information of GWHGAAZE004221

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002531582.1	1.40902E-89	serine/arginine rich splicing factor, putative [Ricinus communis]
COG	YP_001839261.1	3E-13	RNA binding protein
Swissprot	tr\|Q9LHP2\|SL30A_ARATH	5E-68	Serine/arginine-rich SC35-like splicing factor SCL30A
trEMBL	tr\|B9T013\|B9T013_RICCO	5E-90	Serine/arginine rich splicing factor, putative {ECO:0000313\|EMBL:EEF30785.1}
TAIR10	AT3G13570.1	2E-42	SC35-like splicing factor 30A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113526661	113529664	+
GWHAAZE00000001	mRNA	113526661	113529664	+
GWHAAZE00000001	exon	113526661	113526725	+
GWHAAZE00000001	exon	113527484	113527647	+
GWHAAZE00000001	exon	113528346	113528423	+
GWHAAZE00000001	exon	113528989	113529153	+
GWHAAZE00000001	exon	113529248	113529370	+
GWHAAZE00000001	exon	113529559	113529664	+
GWHAAZE00000001	five_prime_UTR	113526661	113526725	+
GWHAAZE00000001	five_prime_UTR	113527484	113527492	+
GWHAAZE00000001	CDS	113527493	113527647	+
GWHAAZE00000001	CDS	113528346	113528423	+
GWHAAZE00000001	CDS	113528989	113529153	+
GWHAAZE00000001	CDS	113529248	113529370	+
GWHAAZE00000001	CDS	113529559	113529664	+

Transcript Sequence
>GWHTAAZE004227 GCTTGTATTTGCGTTTGAGGAGAGGAGACAGAACGATTGGTCTCGAATCAGGTCCTATTTTTTAGGTTGAGAAAATGAGGGGTAGAAGCTACAGTTACAGTCCGTCACCGCCAAGGTATTACAGCAGGAAAATGAGGCATAGAAGTCCTAGCCCTAGGGGTCGATATGGACGTCGTGAAAGGGATCTTCCAACTAGTCTCCTGGTCCGCAACCTGCGCCATGATTGTAGGACCGAAGATCTTCGTGAACCGTTTGGGGAGTTTGGTCCTCTGAAGGACATTTACTTGCCGCGGGATTATTATACTGGGGAGCCGCGCGGTTTTGGTTTTGTGCAATTTGTAGACCCTACTGATGCTGCAGAAGCCAAATATCATATGCATGGTCAAATCCTTCTTGGTCGAGAGTTGACAGTTGTGTTTGCCGAGGAAAACAGAAAGAAGTTTTCTGAGATGAGGGCAAGAGATCGCGTTAGGGGTCGATCATATGATCAGAGGCGGTCCCCACTTCATTATTCTCGCTCGCCATCCTATGGGAGATACTATTCTCGTAGCCCTAGTTACTGTTCTCCTTCACCTAGACGAAGGCGCTACTCAAGGTCAGTTTCCCCTCGAGATGGAAGATACAGAGAGAGGTCTTACTCTAGAAGTCCTTATTACTCGAGGAGTTTGAGCCGGAGCCAAAGTTGGAGTAGGAGTCCTTGA

Network for GWHGAAZE004221

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	42	111	9.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12900	FUSIP1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.610
	SRR3591706	second leaf	11.850
	SRR3591707	mature leaf	31.895
	SRR3591708	Shoot apex	25.212
	SRR3591709	Stem	15.388
	SRR3591710	White floral bud	11.086
	SRR3591711	White flower	11.602
	SRR3591712	Green floral bud	11.004
	SRR3591713	Yellow flower	12.491
SRP173429	SRR8316895	Juvenile bud stage	37.565
	SRR8316896	Juvenile bud stage	90.950
	SRR8316897	Juvenile bud stage	30.698
	SRR8316894	Third green stage	10.452
	SRR8316900	Third green stage	29.297
	SRR8316901	Third green stage	32.725
	SRR8316898	Complete white stage	9.649
	SRR8316899	Complete white stage	24.136
	SRR8316903	Complete white stage	13.421
	SRR8316902	Silver flowering stage	22.802
	SRR8316904	Silver flowering stage	21.655
	SRR8316905	Silver flowering stage	12.451
	SRR8316906	Gold flowering stage	48.579
	SRR8316907	Gold flowering stage	43.591
	SRR8316908	Gold flowering stage	30.848
SRP132670	SRR6706286	Control	14.711
	SRR6706287	Light intensity 50%	12.803
	SRR6706288	Light intensity 20%	10.067
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.686
	CNS0095593	Slightly white alabastrum(diploid) 2	12.040
	CNS0095594	Slightly white alabastrum(diploid) 3	17.444
	CNS0095595	Whole white alabastrum(diploid) 2	15.142
	CNS0095596	Whole white alabastrum(diploid) 3	10.609
	CNS0095597	Whole white alabastrum(diploid) 4	10.257
	CNS0095598	Silvery flower (diploied) 1	18.304
	CNS0095599	Silvery flower (diploied) 2	63.165
	CNS0095600	Silvery flower (diploied) 3	62.672
	CNS0095601	Golden flower (diploid) 1	75.682
	CNS0095602	Golden flower (diploid) 2	58.486
	CNS0095603	Golden flower (diploid) 3	60.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.001
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.732
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.299
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.228
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.833
	CNS0095610	Silvery flower (tetraploid) 1	36.002
	CNS0095611	Silvery flower (tetraploid) 2	38.256
	CNS0095612	Silvery flower (tetraploid) 3	12.643
	CNS0095613	Golden flower (tetraploid) 1	37.715
	CNS0095614	Golden flower (tetraploid) 2	40.769
	CNS0095615	Golden flower (tetraploid) 3	11.126
CRA001975	CRR073297	Stem 1	5.895
	CRR073298	Stem 2	4.998
	CRR073299	Stem 3	2.537
	CRR073300	Leaf 1	7.123
	CRR073301	Leaf 2	5.273
	CRR073302	Leaf 3	3.978
	CRR073303	Juvenile bud 1	3.749
	CRR073304	Juvenile bud 2	1.496
	CRR073305	Juvenile bud 3	3.406
	CRR073306	Third green 1	0.944
	CRR073307	Third green 2	1.292
	CRR073308	Third green 3	0.837
	CRR073309	Second white 1	0.670
	CRR073310	Second white 2	1.648
	CRR073311	Second white 3	0.379
	CRR073312	Silver flowering 1	1.053
	CRR073313	Silver flowering 2	1.078
	CRR073314	Silver flowering 3	1.115
	CRR073315	Gold flowering 1	2.361
	CRR073316	Gold flowering 2	1.696
	CRR073317	Gold flowering 3	0.590
	CRR073318	Tawny withering 1	2.243
	CRR073319	Tawny withering 2	7.474
	CRR073320	Tawny withering 3	2.163