Gene detail

Detail information of GWHGAAZE004219

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653852.1	0	PREDICTED: pre-mRNA-splicing factor prp12 isoform X4 [Vitis vinifera]
Swissprot	tr\|O49552\|DDB1B_ARATH	3E-28	DNA damage-binding protein 1b
trEMBL	tr\|D7TI88\|D7TI88_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29964.3}
TAIR10	AT3G11960.1	0	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113492556	113513910	+
GWHAAZE00000001	mRNA	113492556	113513910	+
GWHAAZE00000001	exon	113492556	113492690	+
GWHAAZE00000001	exon	113494578	113494925	+
GWHAAZE00000001	exon	113495706	113495840	+
GWHAAZE00000001	exon	113496219	113496298	+
GWHAAZE00000001	exon	113496433	113496516	+
GWHAAZE00000001	exon	113496654	113496741	+
GWHAAZE00000001	exon	113496890	113497044	+
GWHAAZE00000001	exon	113497531	113499499	+
GWHAAZE00000001	exon	113500448	113500758	+
GWHAAZE00000001	exon	113507547	113507865	+
GWHAAZE00000001	exon	113508169	113508324	+
GWHAAZE00000001	exon	113509159	113509300	+
GWHAAZE00000001	exon	113511485	113511561	+
GWHAAZE00000001	exon	113511798	113511937	+
GWHAAZE00000001	exon	113512043	113512151	+
GWHAAZE00000001	exon	113513079	113513910	+
GWHAAZE00000001	five_prime_UTR	113492556	113492690	+
GWHAAZE00000001	five_prime_UTR	113494578	113494760	+
GWHAAZE00000001	CDS	113494761	113494925	+
GWHAAZE00000001	CDS	113495706	113495840	+
GWHAAZE00000001	CDS	113496219	113496298	+
GWHAAZE00000001	CDS	113496433	113496516	+
GWHAAZE00000001	CDS	113496654	113496741	+
GWHAAZE00000001	CDS	113496890	113497044	+
GWHAAZE00000001	CDS	113497531	113499499	+
GWHAAZE00000001	CDS	113500448	113500758	+
GWHAAZE00000001	CDS	113507547	113507865	+
GWHAAZE00000001	CDS	113508169	113508324	+
GWHAAZE00000001	CDS	113509159	113509300	+
GWHAAZE00000001	CDS	113511485	113511561	+
GWHAAZE00000001	CDS	113511798	113511937	+
GWHAAZE00000001	CDS	113512043	113512151	+
GWHAAZE00000001	CDS	113513079	113513279	+
GWHAAZE00000001	three_prime_UTR	113513280	113513910	+

Transcript Sequence
>GWHTAAZE004225 TTCAGCCTCTTTTTTTGTTTTTTCCATTCCCGAACTGATTGAACTGAGATATATAATCACTACCACCACCACCACAACCTATTTCAAAGCCGGGATCACTGTTTCTGAGCACAATCGAGATTCATTTTCGTTAAGGTTTTGCATTGTACGGTTGGTTGTCCCGCCGTACAACGGTCAACGTTACAAATAGTGTATATACTACATTTGTTATTTTTTGATCAAGCCTCATGGAAGCATGAAATCCTTCTCAAGGGTTTCGTTTTGCAAGGAAATTCGAATTTCACAAGCTTATCTTTTCAAGTGATTTTGAGTGTGTTAATGGCTGTTTCGGAGGAAGAGTCGTCCTCGGCAAATAGTAAGTCAAGATCGGCTTCCAATGGCACGTACTACCTGGCAAAGTGCGTTCTCAGAGGAAGCGTTGTTCTTCAAGTCGTTCATGGACATATCCGCTCGCCCTCCTCTAATGATATCGTCTTTGGCAAGGAGACTTCCATAGAGTTGGTGATAATTGACGATGATGGAGTTGTACAATCTATTTGTGAGCAGCCTGTATTTGGTACAATTAAAGATCTTGCGGTCCTACCATGGAATGAGAGGTTTCATGCACGAAGCCCACAGATGCTAGGGAGGGACCTATTGGTGGTTATTTCTGATTCCGGGAAGCTCTCGTTCCTTACATTTTGTAATGAAATGCACAGGTTTTTCCCATGGACTCATATCCAACTTTCTAGTCCTGGAAACTCAAGGCATCAAGTTGGAAGGATGCTTGCTGTTGATTCTAGTGGTTGTTTCATAGCAGCCGGTGCATATGATGATCAATTGGCCCTGTTCTCTGTCTCGACATCAGCTGGTAGTGATGTTGTTGATAAGAGAATAGTTTATCCTTCTGAAGTTGAAGGAGAGGCAAGTACTGACACAGGTGTTAACAGTATCCGTGGTACTATATGGAGCATGTGCTTTATTTCAAAAGATTTTCGTCAACCAAGCATGGAGTACAACCCTGTACTAGCCATTCTTCTCAATAGGAGGGGATCGTACCTAAACGAGCTTCTTTTACTGGAATGGAACGTTAGGGAACAAACTGTTCATGTAATTTCTCAGTTTGCAGAAGAGGGACCCCTAGCCCATGACATAATTGAAGTTCCTCATTCTTATGGATTTGCCTTTCTGTTTAGGGTTGGTGATGCTCTCTTAATGGATCTTAGGGACCCCCACAACCCTCATTGTGTCCACAAAACAAGCCTAAGTTTCTTATCTCCTGCAGTTGAGGAGCAAAATTTTGTTGAAGAGTCATGTAGAGTAAATGACGTTGACGAAGAAGGTATATTCAATGTTGCTGCTTCTGCTTTGTTGGAGTTGAGTGACATACATAAAGATGATGACCCTATGAATATAGATGGAGAGTGTGGCAGTATAAAATCAACCTGCAACCGTGTGTGCTCGTGGAGTTGGGAACCCTTGAGTGACACTAACAAAATCCCGCAATTAATTTTCTGTGTAGATACTGGAGAAATTTTCATGATTGAAATTTCTTCTGATTCTAGTGGGCCCAAAGCTAACCTATCTGATTGTCTCTACAAAGGTATACCATCTAAGGCACTTTTGTGGGTTGAAGGTGGTTTTTTGGCTGCACTTGTAGAGATGGGTGATGGGATGGTCCTAAAGTTCGATGAGGGAAGGCTAATTTACAGAAGTGCCATTCAAAACATAGCTCCAATCTTGGATATGTCGGTTGGGGATTACCATGATGAGAAACACGATCAAATGTTTGCCTGTAGTGGGGTGGCACCAGAGGGATCATTGAGGATAATTCGAAGCGGTATCAGTGTGGAGAAACTGTTAAAAACTGCTCCTATTTATCAAGGTATAACCGGTACTTGGACGGTTAAAATGAAGATTATAGATTTTTACGATTCTTTTCTCGTTCTATCATTTGTCGAAGAGACCAGGGTGCTCTCTGTTGGTGTAAGCTTTACCGACGTCACCGATTCCGTCGGTTTTCAACCCGATGTTTGTACTCTTGCTTGTGGTCTTGTTGGTGACGGTTTGCTTGTTCAGATTCACCAAAATGGAGTTAGGCTCTGTTTGCCTACAACCATGGCCCACCCCGAAGGGATTCTTTCGTCGGCTCCAATTTCCACATCGTGGGTCCCTGATAACACGACTATCAGTCTTGGAGTAGTGGGGCATAATAGGATAATTGTAGCCACTTCCAATCCATGCATCTTATTCATTCTTGGTGTAAAATGTTTATCAGGTTATAGTTACGAATTATATCAGATGCAACATGTGAAGTTGCAGAACGAATTATCCTGCATTTCGATTCCTCAGAAACTGTTGACCTCTCCCACTAGTTCTTTAACCGATGATCGTATAAGTAATACCTTTGTCCTTGGTACACATAAGCCTTCAGTGGAAGTCCTATCTTTTGTACCTGGTAAAGGCATAAAAGTCCTTGCCGTAGGGACCATATCGTTAACCAACACCATGGGAACTACTATTAGCGGCTGTGTACCTCAAGATGTAAGGCTTGTGCTGGTTGATAGACTCTATATTCTTTCTGGACTTAGAAATGGAATGCTACTTCGATTTGAGTGGCCCACACTATCCTCATTAGAATTGCCCAATCAGAGACATTATCTGGGTTCCTGTTTGGTGGATACCTTCTCTCAATCGAATATTATTTCTCCAAATTGTAATGGTGCTCCAATTTGTGCATCTTATTTTTCTCAGACGAAGGACAATTTTCCTGTTCATCTGCAATTGATCGCAATACGCCGTATAGGCATTACTCCTGCTTTCCTTGTTCCATTGAGTGATTCCCTTGAGGCTGACGTAATTGCTCTCAGTGATAGGCCCTGGTTATTGCAAGCTGCAAGGCACAGCCTCTCATATACATCTATCTCATTTCAACCTTCGACTCATTTAACTCCTGTATGTTCGATTGAATGTCCTAAAGGGATCTTATTTGTTGCAGAGAACAGTCTCCATTTGGTGGAGATGGTGCACAGTAAGAGGCTTAATGTGCAGAAGTTTCATCTCGGAGGTACTCCAAGGAAGGTTCTATTTCATAGTGAAAGCAGGTTGTTGCTTGTCATGAGGACAGAGTTGAGTAGTGATTCTTATTCGTCTGATATTTGTTGTGTGGATCCTCTCAGTGGATCAGTTCTATCCTCTTTTAAACTTGATCCGGGGGAAACTGGAAAATGCATGGAATTGGTGAAGGTTGGAAATGAACATGCCCTGGTTATTGGAACTAGTCTTTCTGCTGGTCCAGCTATAATGCCCAGTGGTGAAGCTGAAAGTACAAGGGGCCGTCTCATAGTCTTGTGTCTCGAACATAGGCAAAATTCGGATAGTGGTTCAATGTCATTTTGTTCGAAGACTGGTTCGTCTTCTCAGCGTACTTCACCTTTTCGAGAAATTGTTGGATATGCTGCCGAACAGCTATCAAGCAGCAGTCTTTGCAGCAGTCCCGATGATAATAATAGTTGCGATGGTATCAAGCTTGAAGAAACCGAAGCATGGAATTTGCGATTAGCTTATTCCACAATCTGGCCTGGAATGGTACTCGCAGTTTGTCCCTATCTTGATCGTTATTTCTTGGCCTCTGCTGGTAACGCGTTTTACGTATGTGGTTTCCCCAATGATAATTCACAAAGGGTTAGAAGGTTAGCTGTAGGAAGAACACGCTCCATGATAATGACCTTGGCGGCGCATATCACTAGAATTGCTGTTGGTGATTGTCGGGATGGAGTTCTTTTCTATTCATACCATGAGGATGCAAGAAAACTGGAGCAACTTTACTGTGACCCTGCACAGAGGCTAGTTGCTGAATGTGTTCTTATGGATGTTGAAACTGCCATTGTTTCAGATCGCAAGGGGAGTATTGCTGTCTTGTCTTGTGCCAATCATTTAGGAGATAATGCAAGTCCAGAATGCAACTTAGCACTGAATTGTTCATATTATATGGGCGAGATAGCCATGAGCATCAGGAAGGGTTCGTTTTCGTATAAGCTTCCAGCTGATGATTTATCGAAGGGATGTAATGTTTCTAGTACAATACTTGAAACGTCCCAGAGTAGTATCGTGGCAAGCACACTTTTGGGAAGTATAATAATCTTCATTCCTATATCAAGGGAGGAATATGAGCTTTTAGAAGCTGTACAAGCTAGACTTGTCGTTCACCCGTTGACTGCCCCTATTTTAGGAAATGATCACAATGAGTTCCGCAGCCGTGAAAGCCCGGCTGGGGTACCTAAGATTCTGGATGGGGATATGCTAGCTCAATTCTTGGAGCTTACAAGTATGCAACAAGAAGCTGTGTTAGCATTGCCTCTTGGCTCACCAACTACTGTTATGTTAAACATGAAGCCATCATCTCCTTCACCGATAACCGTGAATCAGGTTGTGCGTCTCCTTGAGCGCGTTCATTACGCCTTAAATTAAACCTCTGGTTTCCTCTAAAAGCTGGTCCGTTCATCTCAAAGGAAATGAAACATGATCATATAGCACAAATAGCCTCATAGTGTCTCACAAGGTTCGCTCCAAACTATATAATATAATGGACATATGCGATCTAACAAACCGCACAGAATGAAATTTTCCAAATACCTGCAAGAACTAAGCAGAATAATTATAGAGAAATGAGGCTTCAATTCCCCAACCCCAAAAAAAATAATAATTTCTGAGCTGTCAATACTTGATGCATATCGATGGTGGAGGGATTCGTCGTGTTGTATATACAGACCGTTCGATCAAAGAAATCGCTTGTATTTAATCTAGCTGGGTGTGTGTGCCATTTTCTGTTCGGCTTTAAAGTTAAAATGCGTAGATTGTGATATTATTGGTTATAATACTAATTAGCAATACTAGTGTGCATTTTTCAGTTCATTTTGGATTTGTGATTCATGGATGGGTGCTAGCAGGAAGTTCCTGTGGAGGAATTTATAATTTTGATATTACATGGTTAATTCATAGTTTCTAATGAAATCTTGTTTGATAAGAATTCCAAGTGTTGTTAACGATTGGAATGATGATGTACCATAATTGATATAATATAGTTGTATTTGCGAAGAAA

Network for GWHGAAZE004219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10433.10	MMS1_N	105	669	6.30E-104
PF03178.16	CPSF_A	1070	1327	2.90E-30

Protein Sequence

>GWHPAAZE004222
MAVSEEESSSANSKSRSASNGTYYLAKCVLRGSVVLQVVHGHIRSPSSNDIVFGKETSIELVIIDDDGVVQSICEQPVFGTIKDLAVLPWNERFHARSPQMLGRDLLVVISDSGKLSFLTFCNEMHRFFPWTHIQLSSPGNSRHQVGRMLAVDSSGCFIAAGAYDDQLALFSVSTSAGSDVVDKRIVYPSEVEGEASTDTGVNSIRGTIWSMCFISKDFRQPSMEYNPVLAILLNRRGSYLNELLLLEWNVREQTVHVISQFAEEGPLAHDIIEVPHSYGFAFLFRVGDALLMDLRDPHNPHCVHKTSLSFLSPAVEEQNFVEESCRVNDVDEEGIFNVAASALLELSDIHKDDDPMNIDGECGSIKSTCNRVCSWSWEPLSDTNKIPQLIFCVDTGEIFMIEISSDSSGPKANLSDCLYKGIPSKALLWVEGGFLAALVEMGDGMVLKFDEGRLIYRSAIQNIAPILDMSVGDYHDEKHDQMFACSGVAPEGSLRIIRSGISVEKLLKTAPIYQGITGTWTVKMKIIDFYDSFLVLSFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQNGVRLCLPTTMAHPEGILSSAPISTSWVPDNTTISLGVVGHNRIIVATSNPCILFILGVKCLSGYSYELYQMQHVKLQNELSCISIPQKLLTSPTSSLTDDRISNTFVLGTHKPSVEVLSFVPGKGIKVLAVGTISLTNTMGTTISGCVPQDVRLVLVDRLYILSGLRNGMLLRFEWPTLSSLELPNQRHYLGSCLVDTFSQSNIISPNCNGAPICASYFSQTKDNFPVHLQLIAIRRIGITPAFLVPLSDSLEADVIALSDRPWLLQAARHSLSYTSISFQPSTHLTPVCSIECPKGILFVAENSLHLVEMVHSKRLNVQKFHLGGTPRKVLFHSESRLLLVMRTELSSDSYSSDICCVDPLSGSVLSSFKLDPGETGKCMELVKVGNEHALVIGTSLSAGPAIMPSGEAESTRGRLIVLCLEHRQNSDSGSMSFCSKTGSSSQRTSPFREIVGYAAEQLSSSSLCSSPDDNNSCDGIKLEETEAWNLRLAYSTIWPGMVLAVCPYLDRYFLASAGNAFYVCGFPNDNSQRVRRLAVGRTRSMIMTLAAHITRIAVGDCRDGVLFYSYHEDARKLEQLYCDPAQRLVAECVLMDVETAIVSDRKGSIAVLSCANHLGDNASPECNLALNCSYYMGEIAMSIRKGSFSYKLPADDLSKGCNVSSTILETSQSSIVASTLLGSIIIFIPISREEYELLEAVQARLVVHPLTAPILGNDHNEFRSRESPAGVPKILDGDMLAQFLELTSMQQEAVLALPLGSPTTVMLNMKPSSPSPITVNQVVRLLERVHYALN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12830	SF3B3, SAP130, RSE1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.900
	SRR3591706	second leaf	6.370
	SRR3591707	mature leaf	9.433
	SRR3591708	Shoot apex	9.714
	SRR3591709	Stem	15.662
	SRR3591710	White floral bud	16.320
	SRR3591711	White flower	22.556
	SRR3591712	Green floral bud	14.734
	SRR3591713	Yellow flower	17.927
SRP173429	SRR8316895	Juvenile bud stage	6.871
	SRR8316896	Juvenile bud stage	9.833
	SRR8316897	Juvenile bud stage	5.188
	SRR8316894	Third green stage	4.168
	SRR8316900	Third green stage	10.565
	SRR8316901	Third green stage	10.092
	SRR8316898	Complete white stage	4.338
	SRR8316899	Complete white stage	13.265
	SRR8316903	Complete white stage	11.658
	SRR8316902	Silver flowering stage	6.918
	SRR8316904	Silver flowering stage	11.846
	SRR8316905	Silver flowering stage	4.696
	SRR8316906	Gold flowering stage	16.113
	SRR8316907	Gold flowering stage	15.148
	SRR8316908	Gold flowering stage	16.750
SRP132670	SRR6706286	Control	7.007
	SRR6706287	Light intensity 50%	7.622
	SRR6706288	Light intensity 20%	8.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.686
	CNS0095593	Slightly white alabastrum(diploid) 2	6.084
	CNS0095594	Slightly white alabastrum(diploid) 3	4.808
	CNS0095595	Whole white alabastrum(diploid) 2	5.538
	CNS0095596	Whole white alabastrum(diploid) 3	5.188
	CNS0095597	Whole white alabastrum(diploid) 4	6.279
	CNS0095598	Silvery flower (diploied) 1	10.482
	CNS0095599	Silvery flower (diploied) 2	8.136
	CNS0095600	Silvery flower (diploied) 3	22.901
	CNS0095601	Golden flower (diploid) 1	7.506
	CNS0095602	Golden flower (diploid) 2	22.946
	CNS0095603	Golden flower (diploid) 3	21.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.698
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.241
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.441
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.864
	CNS0095610	Silvery flower (tetraploid) 1	18.669
	CNS0095611	Silvery flower (tetraploid) 2	22.171
	CNS0095612	Silvery flower (tetraploid) 3	18.518
	CNS0095613	Golden flower (tetraploid) 1	9.245
	CNS0095614	Golden flower (tetraploid) 2	16.313
	CNS0095615	Golden flower (tetraploid) 3	25.517
CRA001975	CRR073297	Stem 1	10.966
	CRR073298	Stem 2	10.358
	CRR073299	Stem 3	9.395
	CRR073300	Leaf 1	11.831
	CRR073301	Leaf 2	10.320
	CRR073302	Leaf 3	8.613
	CRR073303	Juvenile bud 1	9.351
	CRR073304	Juvenile bud 2	6.660
	CRR073305	Juvenile bud 3	13.921
	CRR073306	Third green 1	6.236
	CRR073307	Third green 2	4.332
	CRR073308	Third green 3	7.072
	CRR073309	Second white 1	7.883
	CRR073310	Second white 2	10.572
	CRR073311	Second white 3	14.946
	CRR073312	Silver flowering 1	12.972
	CRR073313	Silver flowering 2	11.435
	CRR073314	Silver flowering 3	11.939
	CRR073315	Gold flowering 1	4.384
	CRR073316	Gold flowering 2	8.853
	CRR073317	Gold flowering 3	5.687
	CRR073318	Tawny withering 1	10.289
	CRR073319	Tawny withering 2	9.065
	CRR073320	Tawny withering 3	8.435