Gene detail

Detail information of GWHGAAZE004208

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006470820.1	0	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Citrus sinensis]
COG	YP_166300.1	2E-27	DNA methylase, C-5 cytosine-specific family
Swissprot	tr\|O49139\|CMT1_ARATH	0	Putative DNA (cytosine-5)-methyltransferase CMT1
trEMBL	tr\|D7TIB5\|D7TIB5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29991.3}
TAIR10	AT1G80740.1	9E-177	chromomethylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113277457	113288129	-
GWHAAZE00000001	mRNA	113277457	113288129	-
GWHAAZE00000001	exon	113277457	113277631	-
GWHAAZE00000001	exon	113278725	113278828	-
GWHAAZE00000001	exon	113278926	113278995	-
GWHAAZE00000001	exon	113279081	113279124	-
GWHAAZE00000001	exon	113279445	113279549	-
GWHAAZE00000001	exon	113280718	113280804	-
GWHAAZE00000001	exon	113281198	113281266	-
GWHAAZE00000001	exon	113282450	113282770	-
GWHAAZE00000001	exon	113282866	113282932	-
GWHAAZE00000001	exon	113283023	113283081	-
GWHAAZE00000001	exon	113283271	113283513	-
GWHAAZE00000001	exon	113283608	113283673	-
GWHAAZE00000001	exon	113283792	113284009	-
GWHAAZE00000001	exon	113284230	113284326	-
GWHAAZE00000001	exon	113284536	113284655	-
GWHAAZE00000001	exon	113284729	113284836	-
GWHAAZE00000001	exon	113287882	113287984	-
GWHAAZE00000001	exon	113288068	113288129	-
GWHAAZE00000001	CDS	113288068	113288129	-
GWHAAZE00000001	CDS	113287882	113287984	-
GWHAAZE00000001	CDS	113284729	113284836	-
GWHAAZE00000001	CDS	113284536	113284655	-
GWHAAZE00000001	CDS	113284230	113284326	-
GWHAAZE00000001	CDS	113283792	113284009	-
GWHAAZE00000001	CDS	113283608	113283673	-
GWHAAZE00000001	CDS	113283271	113283513	-
GWHAAZE00000001	CDS	113283023	113283081	-
GWHAAZE00000001	CDS	113282866	113282932	-
GWHAAZE00000001	CDS	113282450	113282770	-
GWHAAZE00000001	CDS	113281198	113281266	-
GWHAAZE00000001	CDS	113280718	113280804	-
GWHAAZE00000001	CDS	113279445	113279549	-
GWHAAZE00000001	CDS	113279081	113279124	-
GWHAAZE00000001	CDS	113278926	113278995	-
GWHAAZE00000001	CDS	113278725	113278828	-
GWHAAZE00000001	CDS	113277457	113277631	-

Transcript Sequence
>GWHTAAZE004214 ATGTTGCTTCGAGTCGCGGTTCAAACCGGTAAGTGTCATTATGTGTTTGCACTTGGAGAACTGTGCGAATCTGATGAGGAGGAGGTTTTGCAAGCTCGATGTCACTACACTAAAGCTATTGTTGATGGTATTGGATTTGATCTTTATGATGATGCTTATGTCAAAGCTGGAGAGGGAGAACAAGATTATATTGCCAAAATTGTTGAAATGTTCGAAGCTACTGATGGACAACTGTATTTTACTGCTCAGTGGTTTTACAGAGCTGAAGATACGATGATCAAAAAACAGTCTCAGCTTATTGATAAAAGACGCGTCTTTTTTTCGGAGATCAGAGATGACAATCCATTGGATAGCATTGTTTCCAAAGTCAAAATCACTCAACTTTCTCCAAATGTTGAGTTGGCTGCCAAAGAGAAGGCAATGTCAGCTTTTGATCTCTACTATGATATGAGATATTTGTTACCTTGCGCATTTACAACCATAGATACAGATAATCTAAAAGCAGATAGTGATGAATCATCTGTAATTTCAAGTGAGGGCAATTCAGATGGCGGAATAGTGGGAACTACTTCTAATGTTGCTAAATCTTCTGCAATTTGCAAACATCAGGAGTCCAATATGACCATGTTGGACTTGTATTCAGGTTGTGGTGCAATGTCAACTGGACTTTGCTTAGGTGCAGCTCTTTGTGGTGTAAGACTTGTTGGTAGATGGGCCGTTGACTTAAATCCGCAAGCGTGCAAGAGTCTTGAAATAAACCACCCTGGATGTAAGGTGAGGAATGAAGAAGCAGAAAACTTTTTGAAATTACTCGTGGAATGGGAAAAGCTATGCAAACAGTTCAAGTTATTGGGCTCTGAGCAGTTTGAAGATGTCAGTTCAAAACCAGAGAACTCAAATGATGAGGAAGAAGGTGATGGGCCTACGGTTTCTTCAGACGAATTTGAAGTGGGGAAGTTACTTGCTGTTTGTTATGGAGATCCAAATAAGGATAAGAAGCCTGGATTGTATTTTAAGGTCAGATGGAAGGGCTATGGTCCTAGTGATGACACTTGGGAACCACATGATGGCTTAAGTAATTGCGAAGAGAGTATAAAGGAATTTGTGACTAGGGGTTACAAGTCTAGGTTGTTACCTCTTCCTGGAGATGTTGATGTAATTTGTGGAGGCCCTCCTTGTCAGGGAATTAGTGGCTTTAATCGTTTCAGAAACAAAGATGCTCCTTTGAAAGATCCAAAGAACAATCAGCTTTTGGTGTTTATGAGTATTGTTAGCTTTCTAAAGCCAAAATACGTCTTGATGGAGAATGTTGTTGATATAGTTAAGTTTTCTGAAGGATGTTTAATTTCTTATGCCATTGGGCGCCTTGTTTCTATGAACTATCAAGCTCGGTTAGGAATTATGGCAGCAGGGTCTTATGGAGTGTCTCAGTGCCGATTTCGAGTTTTTCTTTGGGGTGCAAGTACTTTGCCTCAATTTCCTTTGCCTACACATGAGGTGGTTGGAAGAGGGGTTGTGACAAATGATTACAAGGACATGGTTGTTCAACATGATGAAAAGGATTCCTACATGTTGGAAGAGAGTCCTTTACTTGGTGATGCAATCTCTGATTTACCTGAGGGAGCCAACTTTCGAGATTTGCCTGGTGTATTGGTTGGAGCAGATAATAAAGTAAAATGGGACCCATCTGTCGAAAGAGTGCTGCTTCATTCTGGAAAACCTCTGGTACCGGATTATTGCATGTCATTTGTTGGTGGGAGGTCATCAAAGCCATTTGGTCGACTGAGCATGGATGAAATGGTGACAACTGTAGTGACAAGGGCAGAACCCCATAACCAGATAATCCTTCATCCAAATCAGGATAGAGTGCTAACTGTTCGTGAAAATGCACGACTACAAGGGTTTCCTGACTGTTACAAACTCAGTGGGCCTATCAAAGAGAGGTATATGCAAGTTGGCAATGCAGTTGCATTTTCAGTATCAATGGCATTGGGATACACTTTAGCCAAAGCAACCCAAAAGGCTCCCAATAACCAGCCTTTGGTCCTCCCATTCAAGTTCCCCAACTGTCTTGGCCAGATCTCATCTTTAGAACAAAATTTGGATGAATCCAATTAA

Network for GWHGAAZE004208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	54	152	3.40E-10
PF00385.25	Chromo	316	371	1.40E-10
PF00145.18	DNA_methylase	379	668	8.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00558	DNMT1, dcm	Metabolic pathways	map01100
K00558	DNMT1, dcm	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.190
	SRR3591706	second leaf	3.822
	SRR3591707	mature leaf	0.467
	SRR3591708	Shoot apex	60.830
	SRR3591709	Stem	8.545
	SRR3591710	White floral bud	1.701
	SRR3591711	White flower	0.346
	SRR3591712	Green floral bud	2.042
	SRR3591713	Yellow flower	0.109
SRP173429	SRR8316895	Juvenile bud stage	7.226
	SRR8316896	Juvenile bud stage	7.642
	SRR8316897	Juvenile bud stage	5.184
	SRR8316894	Third green stage	2.464
	SRR8316900	Third green stage	1.717
	SRR8316901	Third green stage	1.532
	SRR8316898	Complete white stage	0.132
	SRR8316899	Complete white stage	1.088
	SRR8316903	Complete white stage	0.499
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.147
	SRR8316905	Silver flowering stage	0.061
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.113
	SRR8316908	Gold flowering stage	0.101
SRP132670	SRR6706286	Control	1.438
	SRR6706287	Light intensity 50%	1.728
	SRR6706288	Light intensity 20%	1.907
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.495
	CNS0095593	Slightly white alabastrum(diploid) 2	5.052
	CNS0095594	Slightly white alabastrum(diploid) 3	4.084
	CNS0095595	Whole white alabastrum(diploid) 2	2.200
	CNS0095596	Whole white alabastrum(diploid) 3	1.420
	CNS0095597	Whole white alabastrum(diploid) 4	2.012
	CNS0095598	Silvery flower (diploied) 1	1.889
	CNS0095599	Silvery flower (diploied) 2	5.167
	CNS0095600	Silvery flower (diploied) 3	0.930
	CNS0095601	Golden flower (diploid) 1	1.126
	CNS0095602	Golden flower (diploid) 2	0.875
	CNS0095603	Golden flower (diploid) 3	0.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.660
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.402
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.788
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.196
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.932
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.826
	CNS0095610	Silvery flower (tetraploid) 1	0.318
	CNS0095611	Silvery flower (tetraploid) 2	0.377
	CNS0095612	Silvery flower (tetraploid) 3	0.299
	CNS0095613	Golden flower (tetraploid) 1	0.070
	CNS0095614	Golden flower (tetraploid) 2	0.131
	CNS0095615	Golden flower (tetraploid) 3	0.021
CRA001975	CRR073297	Stem 1	7.378
	CRR073298	Stem 2	6.405
	CRR073299	Stem 3	7.164
	CRR073300	Leaf 1	1.657
	CRR073301	Leaf 2	1.375
	CRR073302	Leaf 3	0.737
	CRR073303	Juvenile bud 1	0.890
	CRR073304	Juvenile bud 2	0.302
	CRR073305	Juvenile bud 3	0.648
	CRR073306	Third green 1	0.071
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.084
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.365
	CRR073316	Gold flowering 2	0.156
	CRR073317	Gold flowering 3	0.080
	CRR073318	Tawny withering 1	10.817
	CRR073319	Tawny withering 2	7.396
	CRR073320	Tawny withering 3	9.467