Detail information of GWHGAAZE004186


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284404.10PREDICTED: nuclear pore complex protein NUP93A [Vitis vinifera]
Swissprottr|O22224|NP93A_ARATH0Nuclear pore complex protein NUP93A {ECO:0000303|PubMed:21189294}
trEMBLtr|D7THT1|D7THT1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI29807.3}
TAIR10AT2G41620.10Nucleoporin interacting component (Nup93/Nic96-like) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene112828236112843237-
GWHAAZE00000001mRNA112828236112843237-
GWHAAZE00000001exon112828236112828545-
GWHAAZE00000001exon112829878112830059-
GWHAAZE00000001exon112833911112834813-
GWHAAZE00000001exon112834900112834986-
GWHAAZE00000001exon112836063112836146-
GWHAAZE00000001exon112836275112836328-
GWHAAZE00000001exon112836590112836724-
GWHAAZE00000001exon112836861112836956-
GWHAAZE00000001exon112837112112837381-
GWHAAZE00000001exon112838290112838379-
GWHAAZE00000001exon112839461112839520-
GWHAAZE00000001exon112841659112841725-
GWHAAZE00000001exon112842850112842941-
GWHAAZE00000001exon112843028112843140-
GWHAAZE00000001exon112843163112843237-
GWHAAZE00000001five_prime_UTR112843164112843237-
GWHAAZE00000001CDS112843163112843163-
GWHAAZE00000001CDS112843028112843140-
GWHAAZE00000001CDS112842850112842941-
GWHAAZE00000001CDS112841659112841725-
GWHAAZE00000001CDS112839461112839520-
GWHAAZE00000001CDS112838290112838379-
GWHAAZE00000001CDS112837112112837381-
GWHAAZE00000001CDS112836861112836956-
GWHAAZE00000001CDS112836590112836724-
GWHAAZE00000001CDS112836275112836328-
GWHAAZE00000001CDS112836063112836146-
GWHAAZE00000001CDS112834900112834986-
GWHAAZE00000001CDS112833911112834813-
GWHAAZE00000001CDS112829878112830059-
GWHAAZE00000001CDS112828236112828545-
Transcript Sequence

Network for GWHGAAZE004186

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0228GO:0000808 origin recognition complex GOslim:cellular_component
GO:0005643 nuclear pore GOslim:cellular_component
map03030 DNA replication
GO:0017056 structural constituent of nuclear pore GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04097.15Nic962528281.60E-104
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14309NUP93, NIC96 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005643cellular_componentnuclear pore
GO:0017056molecular_functionstructural constituent of nuclear pore

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.049
SRR3591706second leaf3.136
SRR3591707mature leaf2.948
SRR3591708Shoot apex9.988
SRR3591709Stem5.495
SRR3591710White floral bud6.002
SRR3591711White flower6.947
SRR3591712Green floral bud8.405
SRR3591713Yellow flower3.942
SRP173429 SRR8316895Juvenile bud stage 11.779
SRR8316896Juvenile bud stage 16.137
SRR8316897Juvenile bud stage 14.094
SRR8316894Third green stage 6.863
SRR8316900Third green stage 16.982
SRR8316901Third green stage 16.081
SRR8316898Complete white stage 6.793
SRR8316899Complete white stage 21.061
SRR8316903Complete white stage 12.745
SRR8316902Silver flowering stage8.989
SRR8316904Silver flowering stage12.349
SRR8316905Silver flowering stage6.366
SRR8316906Gold flowering stage 20.463
SRR8316907Gold flowering stage 20.399
SRR8316908Gold flowering stage 33.435
SRP132670SRR6706286Control18.703
SRR6706287Light intensity 50%18.581
SRR6706288Light intensity 20%19.605
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.518
CNS0095593Slightly white alabastrum(diploid) 211.210
CNS0095594Slightly white alabastrum(diploid) 311.026
CNS0095595Whole white alabastrum(diploid) 211.348
CNS0095596Whole white alabastrum(diploid) 39.894
CNS0095597Whole white alabastrum(diploid) 411.461
CNS0095598Silvery flower (diploied) 113.372
CNS0095599Silvery flower (diploied) 212.610
CNS0095600Silvery flower (diploied) 321.009
CNS0095601Golden flower (diploid) 114.313
CNS0095602Golden flower (diploid) 219.860
CNS0095603Golden flower (diploid) 318.745
CNS0095604Slightly white alabastrum(tetraploid) 122.231
CNS0095605Slightly white alabastrum(tetraploid) 217.963
CNS0095606Slightly white alabastrum(tetraploid) 330.880
CNS0095607Whole white alabastrum(tetraploid) 117.266
CNS0095608Whole white alabastrum(tetraploid) 219.109
CNS0095609Whole white alabastrum(tetraploid) 330.578
CNS0095610Silvery flower (tetraploid) 138.669
CNS0095611Silvery flower (tetraploid) 237.446
CNS0095612Silvery flower (tetraploid) 336.096
CNS0095613Golden flower (tetraploid) 118.033
CNS0095614Golden flower (tetraploid) 233.878
CNS0095615Golden flower (tetraploid) 331.488
CRA001975CRR073297Stem 117.904
CRR073298Stem 215.839
CRR073299Stem 315.889
CRR073300Leaf 118.656
CRR073301Leaf 215.386
CRR073302Leaf 317.663
CRR073303Juvenile bud 115.635
CRR073304Juvenile bud 210.130
CRR073305Juvenile bud 321.109
CRR073306Third green 17.386
CRR073307Third green 25.309
CRR073308Third green 37.707
CRR073309Second white 110.489
CRR073310Second white 210.047
CRR073311Second white 312.010
CRR073312Silver flowering 19.666
CRR073313Silver flowering 210.784
CRR073314Silver flowering 39.508
CRR073315Gold flowering 17.846
CRR073316Gold flowering 210.819
CRR073317Gold flowering 36.043
CRR073318Tawny withering 19.886
CRR073319Tawny withering 212.011
CRR073320Tawny withering 312.231