Detail information of GWHGAAZE004169


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009784791.10PREDICTED: probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Nicotiana sylvestris]
COGNP_348338.19E-12NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
Swissprottr|Q8S0G4|GPDH1_ORYSJ0Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
trEMBLtr|K4BQD3|K4BQD3_SOLLC0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}
TAIR10AT2G41540.306-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene112565010112569223+
GWHAAZE00000001mRNA112565010112569223+
GWHAAZE00000001exon112565010112565664+
GWHAAZE00000001exon112566463112566684+
GWHAAZE00000001exon112567485112567732+
GWHAAZE00000001exon112568261112568400+
GWHAAZE00000001exon112568932112569223+
GWHAAZE00000001CDS112565010112565664+
GWHAAZE00000001CDS112566463112566684+
GWHAAZE00000001CDS112567485112567732+
GWHAAZE00000001CDS112568261112568400+
GWHAAZE00000001CDS112568932112569055+
GWHAAZE00000001three_prime_UTR112569056112569223+
Transcript Sequence

Network for GWHGAAZE004169

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01210.24NAD_Gly3P_dh_N1462481.50E-10
PF07479.15NAD_Gly3P_dh_C2744282.90E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00006GPD1 Biosynthesis of secondary metabolites map01110
Glycerophospholipid metabolismmap00564
MAPK signaling pathway - yeastmap04011

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0046168biological_processglycerol-3-phosphate catabolic process
GO:0006072biological_processglycerol-3-phosphate metabolic process
GO:0005975biological_processcarbohydrate metabolic process
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.777
SRR3591706second leaf63.484
SRR3591707mature leaf21.281
SRR3591708Shoot apex33.079
SRR3591709Stem5.045
SRR3591710White floral bud21.150
SRR3591711White flower9.120
SRR3591712Green floral bud45.464
SRR3591713Yellow flower3.690
SRP173429 SRR8316895Juvenile bud stage 19.822
SRR8316896Juvenile bud stage 26.231
SRR8316897Juvenile bud stage 10.843
SRR8316894Third green stage 14.909
SRR8316900Third green stage 50.676
SRR8316901Third green stage 40.352
SRR8316898Complete white stage 16.278
SRR8316899Complete white stage 48.543
SRR8316903Complete white stage 17.170
SRR8316902Silver flowering stage6.764
SRR8316904Silver flowering stage9.530
SRR8316905Silver flowering stage3.863
SRR8316906Gold flowering stage 4.951
SRR8316907Gold flowering stage 4.342
SRR8316908Gold flowering stage 4.890
SRP132670SRR6706286Control30.041
SRR6706287Light intensity 50%35.482
SRR6706288Light intensity 20%41.377
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.205
CNS0095593Slightly white alabastrum(diploid) 233.208
CNS0095594Slightly white alabastrum(diploid) 320.009
CNS0095595Whole white alabastrum(diploid) 228.791
CNS0095596Whole white alabastrum(diploid) 321.890
CNS0095597Whole white alabastrum(diploid) 424.290
CNS0095598Silvery flower (diploied) 115.586
CNS0095599Silvery flower (diploied) 218.152
CNS0095600Silvery flower (diploied) 316.359
CNS0095601Golden flower (diploid) 112.348
CNS0095602Golden flower (diploid) 29.372
CNS0095603Golden flower (diploid) 39.591
CNS0095604Slightly white alabastrum(tetraploid) 133.750
CNS0095605Slightly white alabastrum(tetraploid) 226.079
CNS0095606Slightly white alabastrum(tetraploid) 371.809
CNS0095607Whole white alabastrum(tetraploid) 118.282
CNS0095608Whole white alabastrum(tetraploid) 218.236
CNS0095609Whole white alabastrum(tetraploid) 342.604
CNS0095610Silvery flower (tetraploid) 117.009
CNS0095611Silvery flower (tetraploid) 211.505
CNS0095612Silvery flower (tetraploid) 318.635
CNS0095613Golden flower (tetraploid) 14.869
CNS0095614Golden flower (tetraploid) 212.637
CNS0095615Golden flower (tetraploid) 32.945
CRA001975CRR073297Stem 146.785
CRR073298Stem 241.084
CRR073299Stem 331.917
CRR073300Leaf 160.169
CRR073301Leaf 256.664
CRR073302Leaf 351.700
CRR073303Juvenile bud 141.577
CRR073304Juvenile bud 225.244
CRR073305Juvenile bud 342.163
CRR073306Third green 113.075
CRR073307Third green 210.113
CRR073308Third green 311.852
CRR073309Second white 14.229
CRR073310Second white 23.622
CRR073311Second white 31.459
CRR073312Silver flowering 10.993
CRR073313Silver flowering 20.710
CRR073314Silver flowering 31.369
CRR073315Gold flowering 120.105
CRR073316Gold flowering 213.224
CRR073317Gold flowering 314.602
CRR073318Tawny withering 119.500
CRR073319Tawny withering 28.241
CRR073320Tawny withering 322.207