Gene detail

Detail information of GWHGAAZE004160

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086690.1	2.7482E-179	PREDICTED: proteasome subunit beta type-7-A [Sesamum indicum]
COG	YP_003535609.1	3E-28	proteasome subunit beta
Swissprot	tr\|Q7DLS1\|PSB7B_ARATH	4E-174	Proteasome subunit beta type-7-B (Precursor)
trEMBL	tr\|A0A068UXL6\|A0A068UXL6_COFCA	6E-176	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT5G40580.2	9E-138	20S proteasome beta subunit PBB2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	112453836	112458325	+
GWHAAZE00000001	mRNA	112453836	112458325	+
GWHAAZE00000001	exon	112453836	112453979	+
GWHAAZE00000001	exon	112455528	112455669	+
GWHAAZE00000001	exon	112456061	112456157	+
GWHAAZE00000001	exon	112456248	112456317	+
GWHAAZE00000001	exon	112456437	112456541	+
GWHAAZE00000001	exon	112457554	112457652	+
GWHAAZE00000001	exon	112457784	112457871	+
GWHAAZE00000001	exon	112458249	112458325	+
GWHAAZE00000001	CDS	112453836	112453979	+
GWHAAZE00000001	CDS	112455528	112455669	+
GWHAAZE00000001	CDS	112456061	112456157	+
GWHAAZE00000001	CDS	112456248	112456317	+
GWHAAZE00000001	CDS	112456437	112456541	+
GWHAAZE00000001	CDS	112457554	112457652	+
GWHAAZE00000001	CDS	112457784	112457871	+
GWHAAZE00000001	CDS	112458249	112458325	+

Transcript Sequence
>GWHTAAZE004166 ATGTCTAAGGCAGCTGTGGATCTTCCTCCCAAGGGTGGCTTCAGTTTTGATTTGTGTAGGAGGAATGAGATGCTCAATAATAAAGGTTTCAAGTCTCAATCTTTTCTCAAGACCGGAACTACCATTGTTGGTTTAATTTTCCAGGATGGTGTAATTCTTGGGGCAGATACACGAGCAACTGAAGGACCTATTGTTGCTGATAAGAACTGTGAGAAAATTCATTATATGGCACCAAACATTTATTGCTGTGGAGCAGGGACAGCTGCTGATACAGAGGCAGTGACAGACACAATCAGCTCTAACCTGAATCTGCATCGTTATCATACTGGTCGAGAATCAAGGGTTGTCACTGCCCTAACACTTCTGAAGTCTCATCTTTTCCGGTATCAAGGTCATGTGTCAGCAGCTTTGGTGCTCGGTGGTGTTGATGTGACAGGGCCTCATTTGCACACAATTTACCCCCATGGATCAACTGACACGCTGCCATTCGCTACAATGGGCTCTGGTTCCCTCGCTGCAATGGCTGTTTTTGAATCGAAATACCGTGAAGGGATGGGTCGGGATGAAGGAGTAAATCTGGTGTGTGATGCTATCCGCTCAGGTATATTCAATGATCTGGGAAGTGGAAGCAATGTAGACATCTGTGTTATAACCAAGGGACATAAGGAGTACCTGCGAAATCACCTGCTACCAAATCCCCGTACATATGTCAGTTCAAAAGGATATTCATTTTCTAAGAAAACTGAGGTTCTGATGACGAAGATCACACCGTTAAAGGAGTTGGTGGTGGTAGTTGAAGGAGGAGACGCAATGGAAGAATGA

Network for GWHGAAZE004160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	37	217	8.90E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02739	PSMB7	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004298	molecular_function	threonine-type endopeptidase activity
GO:0004175	molecular_function	endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	86.867
	SRR3591706	second leaf	39.012
	SRR3591707	mature leaf	36.586
	SRR3591708	Shoot apex	59.899
	SRR3591709	Stem	80.313
	SRR3591710	White floral bud	94.251
	SRR3591711	White flower	134.811
	SRR3591712	Green floral bud	107.830
	SRR3591713	Yellow flower	133.830
SRP173429	SRR8316895	Juvenile bud stage	60.258
	SRR8316896	Juvenile bud stage	97.477
	SRR8316897	Juvenile bud stage	38.679
	SRR8316894	Third green stage	36.086
	SRR8316900	Third green stage	115.137
	SRR8316901	Third green stage	105.059
	SRR8316898	Complete white stage	44.472
	SRR8316899	Complete white stage	125.492
	SRR8316903	Complete white stage	63.630
	SRR8316902	Silver flowering stage	51.977
	SRR8316904	Silver flowering stage	55.068
	SRR8316905	Silver flowering stage	28.859
	SRR8316906	Gold flowering stage	132.876
	SRR8316907	Gold flowering stage	152.989
	SRR8316908	Gold flowering stage	149.303
SRP132670	SRR6706286	Control	100.505
	SRR6706287	Light intensity 50%	96.057
	SRR6706288	Light intensity 20%	110.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.970
	CNS0095593	Slightly white alabastrum(diploid) 2	77.823
	CNS0095594	Slightly white alabastrum(diploid) 3	77.803
	CNS0095595	Whole white alabastrum(diploid) 2	69.935
	CNS0095596	Whole white alabastrum(diploid) 3	75.559
	CNS0095597	Whole white alabastrum(diploid) 4	63.716
	CNS0095598	Silvery flower (diploied) 1	62.154
	CNS0095599	Silvery flower (diploied) 2	67.474
	CNS0095600	Silvery flower (diploied) 3	105.076
	CNS0095601	Golden flower (diploid) 1	62.134
	CNS0095602	Golden flower (diploid) 2	91.706
	CNS0095603	Golden flower (diploid) 3	89.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	85.625
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.501
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.742
	CNS0095607	Whole white alabastrum(tetraploid) 1	65.566
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.456
	CNS0095609	Whole white alabastrum(tetraploid) 3	122.326
	CNS0095610	Silvery flower (tetraploid) 1	170.991
	CNS0095611	Silvery flower (tetraploid) 2	154.169
	CNS0095612	Silvery flower (tetraploid) 3	148.915
	CNS0095613	Golden flower (tetraploid) 1	148.868
	CNS0095614	Golden flower (tetraploid) 2	156.236
	CNS0095615	Golden flower (tetraploid) 3	165.627
CRA001975	CRR073297	Stem 1	69.615
	CRR073298	Stem 2	75.970
	CRR073299	Stem 3	88.574
	CRR073300	Leaf 1	81.339
	CRR073301	Leaf 2	77.409
	CRR073302	Leaf 3	91.245
	CRR073303	Juvenile bud 1	97.934
	CRR073304	Juvenile bud 2	81.378
	CRR073305	Juvenile bud 3	104.316
	CRR073306	Third green 1	45.121
	CRR073307	Third green 2	46.846
	CRR073308	Third green 3	42.220
	CRR073309	Second white 1	98.500
	CRR073310	Second white 2	69.270
	CRR073311	Second white 3	55.551
	CRR073312	Silver flowering 1	65.219
	CRR073313	Silver flowering 2	81.083
	CRR073314	Silver flowering 3	58.323
	CRR073315	Gold flowering 1	48.597
	CRR073316	Gold flowering 2	64.863
	CRR073317	Gold flowering 3	48.922
	CRR073318	Tawny withering 1	68.620
	CRR073319	Tawny withering 2	61.498
	CRR073320	Tawny withering 3	69.806