Gene detail

Detail information of GWHGAAZE004064

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278590.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
COG	YP_004775215.1	4E-64	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	0	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	110386387	110390009	-
GWHAAZE00000001	mRNA	110386387	110390009	-
GWHAAZE00000001	exon	110387267	110390009	-
GWHAAZE00000001	exon	110386387	110386712	-
GWHAAZE00000001	CDS	110387267	110390009	-
GWHAAZE00000001	CDS	110386387	110386712	-

Transcript Sequence
>GWHTAAZE004070 ATGGCATCCATTACCAAGGCTATGATCTTCATTTTACTCTCATTTCTTTTTATCATAACGTTCCTTTCACCAAATGTTGCTTCTACTTCTAAAAAAGAAGCGATGGCACTCCTTCAATGGAAATCAAGCCTTTTAAGCCAAAACAAGCCCATGCAAACTTCATGGACTCTTCCACCCGATAATACCACAAATTCTTCACCAGAATCCAAAAAAATCCTGAGCCCATGTTCTTGGCTCGGAGTTTCTTGCATAGAAGGGAGCGTAATCCAATTAAACCTTTCGATGGCAGGTTTAAAAGGTACGCTTTACAACTTTTCCTTCTCGTCCTTCCCAAATCTCACGTACATTGACCTTGGCCTTAATGAACTCAACGGTACCATTCCACCGGAGATAGGTACACTATCAAAACTCAAGTATCTTGATTTGTCGTCCAATCATTTTTCGGGTATCATCCCACCAGCGATTTGTCTTTTGAGGAATCTTGAGACTCTTCACTTGTTTGAAAATCAACTCACAGGCCCAATTCCTCGAGAGATAGGACAACTAGATTCTCTCTCTGAGCTTGTATTATACAAAAACTTTCTTGAAGGTCCTATTCCTTCTTCTATGGGCAATTTGAGCAACTTGATTTACCTATACCTCTCTGAGAATAAACTTTCAGGTTATATTCCACCAGAAATAGGAAATCTTGTCAACCTCCTCGTGCTCTATATGGATACCAACAATCTCACCGGTCGAATCCCTTCCACTTTTAGAAAGTTGAGTAATCTAACTGTCATGTATTTGTTCAAAAACCAGTTATTGGGTCCCATTCCCCCTGAAATAGGGATGTTGAACTCTCTCAAGGAGCTCAGCATTCATACAAACAATCTTACTGGCTCAATCCCTCCGTCTTTGGGCAGTCTATCCTCCCTGAGTCTTCTTCATCTCTACACTAATAAACTGTCAGGTCCCATTCCAGAAGAACTAGGAAACTTAGAGTCCATAACCGACCTCCAATTGACCGAGAATCGACTCAGTGGTTCAATTCCTATTTCCCTCGGCAAGTTGAAAAACCTGGAAATTTTGTTCCTTCGCGAGAACAACCTTTCAGGTCCCATCCCACAAGAACTAGGAAACTTGAAATTAGTAGTCCTACAAATAGACACAAATCAATTATCCGGCTCCTTGCCAGACCAGATTTGCCATGGCGGAAAGCTTGTAAATCTCACCGTAAACGATAACCAACTCACTGGTCATATACCAAAAAGCTTTAGAAACTGCCCGAGTTTATCTAGAGTCCGCTTCGACGGTAACAAGCTCACGGGAAATATATCTGAAGCTTTTGGCATATACCCAAACTTACAGTACATGGATATAAGCAATAATGAATTTTACGGGGAGATTTCGGATAATTGGAGTAGATGCAAACAGTTAACAATGCTAGCAATCACAAAGAACAATCTCACTGGTAGTATACCAGTGGCATTTGGAAATGCCACTCAACTCCGTGAACTTTATCTTTCTTCAAATCATTTAGTTGGTGAGATTCCTAAGGAATTTGGGAAATTGAAGTATTTACTGCAGTTGTTTTTGAGCGAGAACCAACTTTCTGGCTCTGTACCTCGAGAACTTGGGTCACTAAGGGAGTTGTTATATCTTGATCTATCAGCGAATAGATTAAGTGGGTCTATACCAGGAGTTCTTGGGGATTGCTCGCATCTGATACATTTGAATTTAAGCAGGAATGAATTTGGCGGGAAAATTCCAATTCAGATCACAAAGTTAGTCCAGCTTGTGGAGCTCGATTTGAGCCGTAACTCACTCTCGGGAGTAATTCCATCACAATTTGGAGGTTTAGAGGGTAATTTGGTGTATGTTGACATATCCTACAATGAGTTGGAGGGTCCGTTACCGAACAATAAAGCGTTTACGAATGCTTCCATAGAAGAATTATGGGGAAACAGAGGTTTGTGTGGCAATGTTACAGGTTTACAGCCCTGTGAAAATCCTATAAAGGGGTTTAAGCATAATCAGAACAAGTGCAACAAACTTGCTCTTACAATCGGACTCCTTCTTTTGGGGGCACTTTTACTTCTCGTTGCATTCATTGGGCTCTTAATCACATATGAGCGAAGAAAGCGAAAAATGCAAGCTAAAAACGCTGGTAAAGAAGATGAAGATATGTTCTCAATGCCAGCGTATGATGGAAGAGTAGTGTATGATGAAATTGTAACATCTACAAAAGATTTCGACGACCTATATTGCATTGGAAAGGGAGGATCTGGAAGCGTTTATAAAGCTCTATTGCCTTCGGGTAATATTGTAGCTGTGAAGAAGCTTCATTCGATATCGGATATGATTGATCGAAAAAATTTTATAAACGAGGTAAGAGCATTAACTGAGATAAAGCACCGGAATATTGTGAAGCTTTATGGGTTTTGTTCACATGCTCGACGCTCATTTTTAATATATGAGTACCTTGAAAGAGGTAGCTTAACGTCAATATTGAGCAACGACAGAGAGGCTAAGGAGATGGATTGGACCAAAAGGATAAATCTCATCAAGGGGGTGGCTCATGCTTTGTGCTATATGCACCATGATTGTGCAACGCCGATTGTTCATCGAGACATATCGAGCAAGAACATATTGCTTGATTCTGGATACGAGGCTAGTGTTTCGGATTTCGGGATTGCTAAGTTTTTAAAGCCGGACTCATCCAATTGGAGCGCGCTTGCAGGCACATATGGATATGTTGCACCAGAGTTTGCTTACACGATGAAAGTAACTGAGAAGTGCGACGTGTATAGTTTTGGAGTGTTGGCACTAGAAGTGATCAAAGGGAAGCATCCCGGTGACTTGATTGATACTATATTGTCTTCACCAACCGAGAAGATACAGTTGAATGATGTCATGGACCAACGACTCCCATTTTCCTCGTCCGGAATTGAGGAAGTATTGGTATCTATCATAACAATGGCGAAAGCATGTCTACATGCTGATCCACAATCAAGGCCAACAATGTATACCGTTTCTCAGTTGTTATCAACTCAGACAACGGGCCTCTCTGAGATTCTTGTTGACCAATAG

Network for GWHGAAZE004064

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	111	171	3.00E-07
PF13855.7	LRR_8	184	243	7.30E-07
PF13855.7	LRR_8	446	506	6.60E-09
PF13855.7	LRR_8	547	602	1.90E-07
PF00069.26	Pkinase	748	1004	1.80E-45

Protein Sequence

>GWHPAAZE004067
MASITKAMIFILLSFLFIITFLSPNVASTSKKEAMALLQWKSSLLSQNKPMQTSWTLPPDNTTNSSPESKKILSPCSWLGVSCIEGSVIQLNLSMAGLKGTLYNFSFSSFPNLTYIDLGLNELNGTIPPEIGTLSKLKYLDLSSNHFSGIIPPAICLLRNLETLHLFENQLTGPIPREIGQLDSLSELVLYKNFLEGPIPSSMGNLSNLIYLYLSENKLSGYIPPEIGNLVNLLVLYMDTNNLTGRIPSTFRKLSNLTVMYLFKNQLLGPIPPEIGMLNSLKELSIHTNNLTGSIPPSLGSLSSLSLLHLYTNKLSGPIPEELGNLESITDLQLTENRLSGSIPISLGKLKNLEILFLRENNLSGPIPQELGNLKLVVLQIDTNQLSGSLPDQICHGGKLVNLTVNDNQLTGHIPKSFRNCPSLSRVRFDGNKLTGNISEAFGIYPNLQYMDISNNEFYGEISDNWSRCKQLTMLAITKNNLTGSIPVAFGNATQLRELYLSSNHLVGEIPKEFGKLKYLLQLFLSENQLSGSVPRELGSLRELLYLDLSANRLSGSIPGVLGDCSHLIHLNLSRNEFGGKIPIQITKLVQLVELDLSRNSLSGVIPSQFGGLEGNLVYVDISYNELEGPLPNNKAFTNASIEELWGNRGLCGNVTGLQPCENPIKGFKHNQNKCNKLALTIGLLLLGALLLLVAFIGLLITYERRKRKMQAKNAGKEDEDMFSMPAYDGRVVYDEIVTSTKDFDDLYCIGKGGSGSVYKALLPSGNIVAVKKLHSISDMIDRKNFINEVRALTEIKHRNIVKLYGFCSHARRSFLIYEYLERGSLTSILSNDREAKEMDWTKRINLIKGVAHALCYMHHDCATPIVHRDISSKNILLDSGYEASVSDFGIAKFLKPDSSNWSALAGTYGYVAPEFAYTMKVTEKCDVYSFGVLALEVIKGKHPGDLIDTILSSPTEKIQLNDVMDQRLPFSSSGIEEVLVSIITMAKACLHADPQSRPTMYTVSQLLSTQTTGLSEILVDQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.061
	SRR3591706	second leaf	0.847
	SRR3591707	mature leaf	2.498
	SRR3591708	Shoot apex	0.229
	SRR3591709	Stem	1.003
	SRR3591710	White floral bud	0.027
	SRR3591711	White flower	1.070
	SRR3591712	Green floral bud	0.120
	SRR3591713	Yellow flower	0.037
SRP173429	SRR8316895	Juvenile bud stage	0.429
	SRR8316896	Juvenile bud stage	1.963
	SRR8316897	Juvenile bud stage	0.331
	SRR8316894	Third green stage	0.292
	SRR8316900	Third green stage	0.275
	SRR8316901	Third green stage	0.502
	SRR8316898	Complete white stage	0.155
	SRR8316899	Complete white stage	0.851
	SRR8316903	Complete white stage	0.787
	SRR8316902	Silver flowering stage	0.281
	SRR8316904	Silver flowering stage	0.191
	SRR8316905	Silver flowering stage	0.150
	SRR8316906	Gold flowering stage	0.405
	SRR8316907	Gold flowering stage	0.590
	SRR8316908	Gold flowering stage	0.193
SRP132670	SRR6706286	Control	0.707
	SRR6706287	Light intensity 50%	0.813
	SRR6706288	Light intensity 20%	0.609
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.399
	CNS0095593	Slightly white alabastrum(diploid) 2	0.427
	CNS0095594	Slightly white alabastrum(diploid) 3	0.488
	CNS0095595	Whole white alabastrum(diploid) 2	0.467
	CNS0095596	Whole white alabastrum(diploid) 3	0.184
	CNS0095597	Whole white alabastrum(diploid) 4	0.079
	CNS0095598	Silvery flower (diploied) 1	1.669
	CNS0095599	Silvery flower (diploied) 2	0.839
	CNS0095600	Silvery flower (diploied) 3	0.479
	CNS0095601	Golden flower (diploid) 1	2.276
	CNS0095602	Golden flower (diploid) 2	1.126
	CNS0095603	Golden flower (diploid) 3	0.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.159
	CNS0095610	Silvery flower (tetraploid) 1	0.286
	CNS0095611	Silvery flower (tetraploid) 2	0.283
	CNS0095612	Silvery flower (tetraploid) 3	0.437
	CNS0095613	Golden flower (tetraploid) 1	0.030
	CNS0095614	Golden flower (tetraploid) 2	0.114
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	0.350
	CRR073298	Stem 2	0.568
	CRR073299	Stem 3	0.110
	CRR073300	Leaf 1	0.154
	CRR073301	Leaf 2	0.389
	CRR073302	Leaf 3	0.196
	CRR073303	Juvenile bud 1	0.044
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.184
	CRR073306	Third green 1	0.027
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.191
	CRR073309	Second white 1	0.048
	CRR073310	Second white 2	0.057
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.017
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.162
	CRR073316	Gold flowering 2	6.865
	CRR073317	Gold flowering 3	7.088
	CRR073318	Tawny withering 1	1.088
	CRR073319	Tawny withering 2	1.040
	CRR073320	Tawny withering 3	0.615