Detail information of GWHGAAZE004061


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011000447.10PREDICTED: cystathionine beta-lyase, chloroplastic [Populus euphratica]
COGYP_591057.17E-145cystathionine beta-lyase
Swissprottr|P53780|METC_ARATH0Cystathionine beta-lyase, chloroplastic (Precursor)
trEMBLtr|U5FQ77|U5FQ77_POPTR0Chloroplast cystathionine beta lyase family protein {ECO:0000313|EMBL:ERP51507.1}
TAIR10AT3G57050.10cystathionine beta-lyase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene110306347110319974-
GWHAAZE00000001mRNA110306347110319974-
GWHAAZE00000001exon110306347110306522-
GWHAAZE00000001exon110308793110308895-
GWHAAZE00000001exon110310321110310428-
GWHAAZE00000001exon110313327110313444-
GWHAAZE00000001exon110315243110315324-
GWHAAZE00000001exon110315421110315517-
GWHAAZE00000001exon110316482110316593-
GWHAAZE00000001exon110316706110316793-
GWHAAZE00000001exon110317595110317686-
GWHAAZE00000001exon110317796110317866-
GWHAAZE00000001exon110318850110318962-
GWHAAZE00000001exon110319045110319213-
GWHAAZE00000001exon110319903110319974-
GWHAAZE00000001CDS110319903110319974-
GWHAAZE00000001CDS110319045110319213-
GWHAAZE00000001CDS110318850110318962-
GWHAAZE00000001CDS110317796110317866-
GWHAAZE00000001CDS110317595110317686-
GWHAAZE00000001CDS110316706110316793-
GWHAAZE00000001CDS110316482110316593-
GWHAAZE00000001CDS110315421110315517-
GWHAAZE00000001CDS110315243110315324-
GWHAAZE00000001CDS110313327110313444-
GWHAAZE00000001CDS110310321110310428-
GWHAAZE00000001CDS110308793110308895-
GWHAAZE00000001CDS110306347110306522-
Transcript Sequence

Network for GWHGAAZE004061

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01053.21Cys_Met_Meta_PP914617.20E-143
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01760metC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0019346biological_processtranssulfuration
GO:0071266biological_process'de novo' L-methionine biosynthetic process
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0004121molecular_functioncystathionine beta-lyase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.562
SRR3591706second leaf29.785
SRR3591707mature leaf29.525
SRR3591708Shoot apex38.412
SRR3591709Stem63.930
SRR3591710White floral bud41.888
SRR3591711White flower49.313
SRR3591712Green floral bud46.011
SRR3591713Yellow flower45.001
SRP173429 SRR8316895Juvenile bud stage 39.941
SRR8316896Juvenile bud stage 60.223
SRR8316897Juvenile bud stage 19.284
SRR8316894Third green stage 24.385
SRR8316900Third green stage 61.961
SRR8316901Third green stage 58.690
SRR8316898Complete white stage 26.206
SRR8316899Complete white stage 85.870
SRR8316903Complete white stage 40.666
SRR8316902Silver flowering stage24.287
SRR8316904Silver flowering stage33.409
SRR8316905Silver flowering stage14.342
SRR8316906Gold flowering stage 49.634
SRR8316907Gold flowering stage 46.530
SRR8316908Gold flowering stage 31.621
SRP132670SRR6706286Control72.469
SRR6706287Light intensity 50%79.718
SRR6706288Light intensity 20%87.189
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.614
CNS0095593Slightly white alabastrum(diploid) 246.253
CNS0095594Slightly white alabastrum(diploid) 339.460
CNS0095595Whole white alabastrum(diploid) 235.876
CNS0095596Whole white alabastrum(diploid) 334.782
CNS0095597Whole white alabastrum(diploid) 432.047
CNS0095598Silvery flower (diploied) 135.359
CNS0095599Silvery flower (diploied) 227.357
CNS0095600Silvery flower (diploied) 350.673
CNS0095601Golden flower (diploid) 135.872
CNS0095602Golden flower (diploid) 241.379
CNS0095603Golden flower (diploid) 340.396
CNS0095604Slightly white alabastrum(tetraploid) 127.214
CNS0095605Slightly white alabastrum(tetraploid) 223.101
CNS0095606Slightly white alabastrum(tetraploid) 344.120
CNS0095607Whole white alabastrum(tetraploid) 113.753
CNS0095608Whole white alabastrum(tetraploid) 213.509
CNS0095609Whole white alabastrum(tetraploid) 330.348
CNS0095610Silvery flower (tetraploid) 131.878
CNS0095611Silvery flower (tetraploid) 235.852
CNS0095612Silvery flower (tetraploid) 327.781
CNS0095613Golden flower (tetraploid) 115.512
CNS0095614Golden flower (tetraploid) 223.962
CNS0095615Golden flower (tetraploid) 315.272
CRA001975CRR073297Stem 193.859
CRR073298Stem 281.739
CRR073299Stem 373.404
CRR073300Leaf 193.477
CRR073301Leaf 291.748
CRR073302Leaf 376.577
CRR073303Juvenile bud 186.907
CRR073304Juvenile bud 264.608
CRR073305Juvenile bud 392.634
CRR073306Third green 126.336
CRR073307Third green 224.207
CRR073308Third green 328.622
CRR073309Second white 136.630
CRR073310Second white 237.161
CRR073311Second white 329.879
CRR073312Silver flowering 127.088
CRR073313Silver flowering 229.561
CRR073314Silver flowering 324.594
CRR073315Gold flowering 140.470
CRR073316Gold flowering 248.854
CRR073317Gold flowering 326.275
CRR073318Tawny withering 171.373
CRR073319Tawny withering 265.757
CRR073320Tawny withering 378.494