Gene detail

Detail information of GWHGAAZE004006

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007028143.1	0	TGACG motif-binding factor 6 isoform 1 [Theobroma cacao]
Swissprot	tr\|O24160\|TGA21_TOBAC	0	TGACG-sequence-specific DNA-binding protein TGA-2.1
trEMBL	tr\|A0A061EV20\|A0A061EV20_THECC	0	TGACG motif-binding factor 6 isoform 1 {ECO:0000313\|EMBL:EOY08646.1}
TAIR10	AT5G06950.4	2E-109	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	109105227	109120977	+
GWHAAZE00000001	mRNA	109105227	109120977	+
GWHAAZE00000001	exon	109105227	109105758	+
GWHAAZE00000001	exon	109106866	109106969	+
GWHAAZE00000001	exon	109108822	109108892	+
GWHAAZE00000001	exon	109108981	109109178	+
GWHAAZE00000001	exon	109109572	109109649	+
GWHAAZE00000001	exon	109109736	109109795	+
GWHAAZE00000001	exon	109110284	109110361	+
GWHAAZE00000001	exon	109110500	109110551	+
GWHAAZE00000001	exon	109117490	109117761	+
GWHAAZE00000001	exon	109118720	109118968	+
GWHAAZE00000001	exon	109120545	109120977	+
GWHAAZE00000001	five_prime_UTR	109105227	109105654	+
GWHAAZE00000001	CDS	109105655	109105758	+
GWHAAZE00000001	CDS	109106866	109106969	+
GWHAAZE00000001	CDS	109108822	109108892	+
GWHAAZE00000001	CDS	109108981	109109178	+
GWHAAZE00000001	CDS	109109572	109109649	+
GWHAAZE00000001	CDS	109109736	109109795	+
GWHAAZE00000001	CDS	109110284	109110361	+
GWHAAZE00000001	CDS	109110500	109110551	+
GWHAAZE00000001	CDS	109117490	109117761	+
GWHAAZE00000001	CDS	109118720	109118968	+
GWHAAZE00000001	CDS	109120545	109120694	+
GWHAAZE00000001	three_prime_UTR	109120695	109120977	+

Transcript Sequence
>GWHTAAZE004012 AAATTGACGATTAAACGAGTTGACTCGTTACGGGCATTGAATACCCAGTAGATTTAGGTCTTTATTTGAGCTGTTGAGTCAAATTTTGCCTCTCTACATTTGCTCAATGTCGTAAGGAGACCAATTTCTATATCGATGATGACGAATTAGGGCTTACTTTTGCTTCAAATATAGGTTTATGTCAAGCAAAGTTAATTCAATTTTGTGGTCCGGTCTAGACAAAATACATCTAGGGGTTATTAGGTTTTCTGATCTGAAAAAGTACTTGAGCACTGAAATTGGGACGGGATTAGGGTTTATGAAGCAAAATTAAGTGAATTTTGTGGTTAGGTCTATACGTCTTAATAGCTTTTCTGATCTATAAAGTACTTGGGTACTGGAATTGGTGAAGGGGGATTGATTAGGGTTCTGTGTATGGTGATGACTTTATGGGTACTAGTAGTAGAACAGTGAAGGTTACTGCAGAAGATGGTTTAAGTGCTACTCCAAGGATGCCTAGCTTCAATTCTCAGTTACCAATCTCCAACACCAATGGTGCAGAGGGAAATGGCGTGCATTCTTCTCGAGTGTCTGATTTTGGTTCGACTGAACAGTCTCTTGGATTCCGATTTGGGGATGCTGCTATTGTCGGCAGAAATCCAGTATTCGAAGCAGTAACTTTAAGTAGCGGAGTGGGTCCTCATCTCCAATTTGGGACGTTTGAGAAGTCTCTTGCTTCCTCCAATACGAATCTCTCAGCTGCTATTTTTGGGTCTCAAACTTTACAACTAGAAAAGGGACCAATATCGAATCTAACTTCTATACCTGGCGGTAATCGCGAGAATTGGGGAGAGTCTAATATGGCAGCTACTAGTCCACAAACCGATAGCTCCACAGACATGGATATGGATGATAAGATTCAAAGGTTTGGAACGGATCCTTTGACTGCTATTGTGGCTTCTGATTCCAGTGACAAATCAAAAGAAAAATCTTCAGACCAAAAGACATTAAGAAGGCTAGCTCAAAATCGTGAAGCTGCCAGGAAAAGCAGATTGAGAAAAAAAGCCTATGTGCAACAGCTAGAGAATAGTCGGATGAAGCTAACCCAACTTGAGCAGGAGCTCCAGCGAACCCGCCAGCAGGGCGGATTAATTTCAGGCTCAGGAGATCAATCCCATTCAACCGGTGGGAATGGGGCGTTGGCATTTGACGTGGAATATGCACGGTGGATGGAAGAACAGAACAGGCAAATAAATGAGCTGAGAGTGGCGGTTAACTCTCATGCAGGTGACACTGAACTTCGCACCGTGGTCGACAATGTGAGGTCACACTTTGATGACATTTTCAGGCTGAAAGGTATAGCAGCCAAGGCCGATGTCTTCCATATCTTGTCTGGAATGTGGAAAACACCTGCAGAGCGGTGCTTTATGTGGATTGGTGGCTTTCGTTCATCAGAACTTCTCAAGCTTCTTGCTGATCATTTGGAGCCTTTAACGGAGCAACAGTCGGCGGGACTTGCGAATTTGCAGCAGTCATCGCAACAGGCAGAAGATGCACTTTCGCAGGGGATGGAGGCATTGCAGCAATCTCTAGCAGAGACACTGGCTAGTGGCACTCCTGCCGCTGCAGGCCCCTCTGGAAATGTGGCCAACTACATGGGCCAAATGGCTATGGCCATGGGCAAGTTGGGTACTCTCGAAGGTTTCCTCCGCCAGGCTGATAATTTGCGGCAACAAACGCTACGGCAAATGCACCATGTACTGACGACCCGACAATCTGCTCGTGCCCTTCTTGCTATAAACGACTATTTTTCACGGCTTCGAGCCCTCAGTTCTCTCTGGCTTGCTCGGCCCCGGGACCAATAACGTGTGGGTCCCCCCCCTTGATGACACAATCTTTAAGGCAAGCTCCAATGGTTGAATCAAAATAGAAACTTGGGAAAATGTAGAATTGTGTATGTTGAGCTGCTGTTGTTGTATGATAACTTCTTGTATTAAAAACATTAGGGGAACTAATAATGGAATTATTATGTTCATATTGAATTAGGATTTGGAAAGAAAATAAGATGATGTTGTAAACTAGGGTTCTGTTTTTTTGATCTGTACATGACCAAATTAATCAATGTTGAATGAAATCTGTGTGGATGTT

Network for GWHGAAZE004006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	185	226	2.50E-07
PF14144.7	DOG1	267	342	5.00E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.206
	SRR3591706	second leaf	16.036
	SRR3591707	mature leaf	19.841
	SRR3591708	Shoot apex	23.178
	SRR3591709	Stem	42.511
	SRR3591710	White floral bud	36.080
	SRR3591711	White flower	41.024
	SRR3591712	Green floral bud	27.263
	SRR3591713	Yellow flower	45.320
SRP173429	SRR8316895	Juvenile bud stage	19.156
	SRR8316896	Juvenile bud stage	24.142
	SRR8316897	Juvenile bud stage	10.111
	SRR8316894	Third green stage	9.990
	SRR8316900	Third green stage	20.523
	SRR8316901	Third green stage	23.798
	SRR8316898	Complete white stage	14.334
	SRR8316899	Complete white stage	46.547
	SRR8316903	Complete white stage	22.519
	SRR8316902	Silver flowering stage	25.199
	SRR8316904	Silver flowering stage	26.062
	SRR8316905	Silver flowering stage	12.402
	SRR8316906	Gold flowering stage	48.942
	SRR8316907	Gold flowering stage	40.105
	SRR8316908	Gold flowering stage	59.199
SRP132670	SRR6706286	Control	20.268
	SRR6706287	Light intensity 50%	20.563
	SRR6706288	Light intensity 20%	22.396
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.124
	CNS0095593	Slightly white alabastrum(diploid) 2	20.623
	CNS0095594	Slightly white alabastrum(diploid) 3	19.627
	CNS0095595	Whole white alabastrum(diploid) 2	15.732
	CNS0095596	Whole white alabastrum(diploid) 3	10.633
	CNS0095597	Whole white alabastrum(diploid) 4	14.767
	CNS0095598	Silvery flower (diploied) 1	29.382
	CNS0095599	Silvery flower (diploied) 2	23.113
	CNS0095600	Silvery flower (diploied) 3	33.381
	CNS0095601	Golden flower (diploid) 1	30.211
	CNS0095602	Golden flower (diploid) 2	37.476
	CNS0095603	Golden flower (diploid) 3	37.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.166
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.253
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.823
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.063
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.872
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.529
	CNS0095610	Silvery flower (tetraploid) 1	34.896
	CNS0095611	Silvery flower (tetraploid) 2	31.577
	CNS0095612	Silvery flower (tetraploid) 3	35.266
	CNS0095613	Golden flower (tetraploid) 1	30.251
	CNS0095614	Golden flower (tetraploid) 2	32.388
	CNS0095615	Golden flower (tetraploid) 3	39.526
CRA001975	CRR073297	Stem 1	28.125
	CRR073298	Stem 2	25.354
	CRR073299	Stem 3	23.868
	CRR073300	Leaf 1	29.633
	CRR073301	Leaf 2	30.370
	CRR073302	Leaf 3	23.736
	CRR073303	Juvenile bud 1	24.475
	CRR073304	Juvenile bud 2	21.165
	CRR073305	Juvenile bud 3	26.227
	CRR073306	Third green 1	27.114
	CRR073307	Third green 2	22.154
	CRR073308	Third green 3	26.134
	CRR073309	Second white 1	15.586
	CRR073310	Second white 2	31.737
	CRR073311	Second white 3	27.152
	CRR073312	Silver flowering 1	19.321
	CRR073313	Silver flowering 2	12.958
	CRR073314	Silver flowering 3	19.453
	CRR073315	Gold flowering 1	14.914
	CRR073316	Gold flowering 2	23.304
	CRR073317	Gold flowering 3	15.219
	CRR073318	Tawny withering 1	29.882
	CRR073319	Tawny withering 2	30.951
	CRR073320	Tawny withering 3	28.547