Gene detail

Detail information of GWHGAAZE004000

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240668.1	0	PREDICTED: CDPK-related kinase 7 [Prunus mume]
COG	YP_007468874.1	8E-28	serine/threonine protein kinase
Swissprot	tr\|Q9LET1\|CAMK7_ARATH	0	CDPK-related kinase 7
trEMBL	tr\|A0A061EVZ3\|A0A061EVZ3_THECC	0	CDPK-related kinase 1 {ECO:0000313\|EMBL:EOY08818.1}
TAIR10	AT3G56760.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	108927825	108934777	+
GWHAAZE00000001	mRNA	108927825	108934777	+
GWHAAZE00000001	exon	108927825	108928307	+
GWHAAZE00000001	exon	108929580	108929710	+
GWHAAZE00000001	exon	108930476	108930584	+
GWHAAZE00000001	exon	108931180	108931258	+
GWHAAZE00000001	exon	108931346	108931642	+
GWHAAZE00000001	exon	108932641	108932753	+
GWHAAZE00000001	exon	108933140	108933202	+
GWHAAZE00000001	exon	108934631	108934777	+
GWHAAZE00000001	CDS	108927825	108928307	+
GWHAAZE00000001	CDS	108929580	108929710	+
GWHAAZE00000001	CDS	108930476	108930584	+
GWHAAZE00000001	CDS	108931180	108931258	+
GWHAAZE00000001	CDS	108931346	108931642	+
GWHAAZE00000001	CDS	108932641	108932753	+
GWHAAZE00000001	CDS	108933140	108933202	+
GWHAAZE00000001	CDS	108934631	108934777	+

Transcript Sequence
>GWHTAAZE004006 ATGGGACTTTGTCAAGGAAAACCCATTGAAAACCGAAAAACCCAATCCGAAAACCCGACAATTCCAACTGAAAATGACTCCACAGTAAATTCCCACACAGGGAAATCATCAAATTTCCCCTTTTACAGCCCAAGTCCACTCCCGAGTGGATTCAAGAACTCGCCCGCCAATTCGAGTGTTAGTTCGACCCCTCTTCGAATATTCAAACGCCCATTTCCACCGCCTTCGCCAGCTAAACACATTCGGGCATTGCTTGCTCGTAGGCATGGCTCTGTTAAGCCTAACGAGGCCTCGATTCCTGAGGGAAGTGAGTGTGATGTTGGGTTGGATAAGAATTTTGGGTACTCTAAGCAATTGGTGAGCCACTATGAGCTTGGGGAAGAAGTGGGCCGAGGGCATTTTGGGTATACTTGTTCGGCTAAGGGGAAGAAAGGGAGCTTGAAGGGACAGGATGTGGCTGTTAAGGTTATTCCCAAATCAAAGATGACTACGGCAATTGCTATCGAGGATGTGAGAAGAGAGGTGAAAATATTACGGGCTTTGACCGGACACAAGAACCTCGTGCAATTCTATGATTGCTATGAGGATGACGACAATGTCTATGTAGTCATGGAGGGTGGAAAATACTCAGAAGAAGATGCAAAAGCCGTTATGGTCCAGATTCTAAGTGTAACCGCTTATTGTCATCTTCAAGGTGTTGTTCATCGTGACTTGAAGCCTGAGAATTTCCTCTTTACCTCTAAGGATGAGAATTCCCCATTGAAGGCCATTGATTTCGGACTCTCTGATTACGTAAAGCCAGATGAAAGGCTAAATGATATCGTGGGGAGTGCATACTATGTAGCTCCTGAAGTTCTGCACAGATCGTACGGCACAGAAGCCGACATGTGGAGTATAGGTGTAATTGCTTACATTCTTCTATGTGGGAGTAGACCCTTTTGGGCCCGCACAGAATCTGGAATTTTCCGAGCCGTCCTTAAGGCGGACCCGAGTTTCGATGATACCCCATGGCCTGATTTGTCTGCTGAAGCAGTTGACTTTGTAAAGAGATTGTTGAACAAAGATTACCGCAAGAGACTGACAGCTTCACAGGCTCTTAGTCATCCATGGCTGGCCAATTATCATGATCTTAAAATACCTTTGGATATGATAATTTATAAGACCGTAAAAGCTTATATATATTCATCGTCTCTACGAAAAGCTGCATTGGGGGCTGTGATTAAGAATTGCACTGACGCCATAAAAGATTCGCGGGTTCTTGATTATGCCAATATGGAGCTCGGACTTAGCCCGTCTGTACCGGTTCATGTAGTCCTCCAGGATTGGATAAGACATTCGGACGGCATGCTTAGTTTCTTGGGATTTGTGAGGCTTCTTCATGGCCTTTCTTCTCGTGCATTTCAGAAAGCCCAAAACATATAA

Network for GWHGAAZE004000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	123	371	1.30E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.431
	SRR3591706	second leaf	35.440
	SRR3591707	mature leaf	46.165
	SRR3591708	Shoot apex	35.472
	SRR3591709	Stem	81.826
	SRR3591710	White floral bud	64.417
	SRR3591711	White flower	78.225
	SRR3591712	Green floral bud	66.760
	SRR3591713	Yellow flower	51.374
SRP173429	SRR8316895	Juvenile bud stage	27.625
	SRR8316896	Juvenile bud stage	33.568
	SRR8316897	Juvenile bud stage	15.414
	SRR8316894	Third green stage	18.011
	SRR8316900	Third green stage	42.876
	SRR8316901	Third green stage	43.226
	SRR8316898	Complete white stage	20.154
	SRR8316899	Complete white stage	70.849
	SRR8316903	Complete white stage	37.949
	SRR8316902	Silver flowering stage	26.516
	SRR8316904	Silver flowering stage	39.340
	SRR8316905	Silver flowering stage	16.890
	SRR8316906	Gold flowering stage	48.777
	SRR8316907	Gold flowering stage	49.002
	SRR8316908	Gold flowering stage	52.041
SRP132670	SRR6706286	Control	43.616
	SRR6706287	Light intensity 50%	42.644
	SRR6706288	Light intensity 20%	45.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.369
	CNS0095593	Slightly white alabastrum(diploid) 2	35.006
	CNS0095594	Slightly white alabastrum(diploid) 3	28.052
	CNS0095595	Whole white alabastrum(diploid) 2	23.394
	CNS0095596	Whole white alabastrum(diploid) 3	23.353
	CNS0095597	Whole white alabastrum(diploid) 4	22.736
	CNS0095598	Silvery flower (diploied) 1	28.901
	CNS0095599	Silvery flower (diploied) 2	23.593
	CNS0095600	Silvery flower (diploied) 3	52.996
	CNS0095601	Golden flower (diploid) 1	23.962
	CNS0095602	Golden flower (diploid) 2	40.942
	CNS0095603	Golden flower (diploid) 3	41.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.778
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.652
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.386
	CNS0095610	Silvery flower (tetraploid) 1	60.757
	CNS0095611	Silvery flower (tetraploid) 2	48.613
	CNS0095612	Silvery flower (tetraploid) 3	83.262
	CNS0095613	Golden flower (tetraploid) 1	35.882
	CNS0095614	Golden flower (tetraploid) 2	44.075
	CNS0095615	Golden flower (tetraploid) 3	48.976
CRA001975	CRR073297	Stem 1	34.654
	CRR073298	Stem 2	34.334
	CRR073299	Stem 3	34.642
	CRR073300	Leaf 1	48.096
	CRR073301	Leaf 2	45.680
	CRR073302	Leaf 3	29.087
	CRR073303	Juvenile bud 1	45.913
	CRR073304	Juvenile bud 2	27.454
	CRR073305	Juvenile bud 3	64.957
	CRR073306	Third green 1	36.901
	CRR073307	Third green 2	30.079
	CRR073308	Third green 3	38.818
	CRR073309	Second white 1	41.681
	CRR073310	Second white 2	38.091
	CRR073311	Second white 3	50.773
	CRR073312	Silver flowering 1	41.955
	CRR073313	Silver flowering 2	40.000
	CRR073314	Silver flowering 3	34.661
	CRR073315	Gold flowering 1	23.031
	CRR073316	Gold flowering 2	30.700
	CRR073317	Gold flowering 3	20.990
	CRR073318	Tawny withering 1	47.777
	CRR073319	Tawny withering 2	60.877
	CRR073320	Tawny withering 3	46.549