Detail information of GWHGAAZE003985


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY08579.14.39674E-69BnaA05g28150D [Brassica napus]
Swissprottr|Q9LTH4|PCLL_ARATH3E-39Transcription factor BOA
trEMBLtr|A0A078F6B3|A0A078F6B3_BRANA2E-69BnaA05g28150D protein {ECO:0000313|EMBL:CDY08579.1}
TAIR10AT5G05090.11E-47Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene108455552108456010-
GWHAAZE00000001mRNA108455552108456010-
GWHAAZE00000001exon108455800108456010-
GWHAAZE00000001exon108455552108455760-
GWHAAZE00000001CDS108455800108456010-
GWHAAZE00000001CDS108455552108455760-
Transcript Sequence

Network for GWHGAAZE003985

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding851335.60E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.855
SRR3591706second leaf8.847
SRR3591707mature leaf8.851
SRR3591708Shoot apex12.418
SRR3591709Stem15.962
SRR3591710White floral bud8.974
SRR3591711White flower14.357
SRR3591712Green floral bud12.887
SRR3591713Yellow flower5.670
SRP173429 SRR8316895Juvenile bud stage 6.884
SRR8316896Juvenile bud stage 9.127
SRR8316897Juvenile bud stage 5.683
SRR8316894Third green stage 4.576
SRR8316900Third green stage 8.057
SRR8316901Third green stage 10.222
SRR8316898Complete white stage 1.438
SRR8316899Complete white stage 11.987
SRR8316903Complete white stage 2.439
SRR8316902Silver flowering stage2.234
SRR8316904Silver flowering stage3.559
SRR8316905Silver flowering stage1.673
SRR8316906Gold flowering stage 5.974
SRR8316907Gold flowering stage 5.830
SRR8316908Gold flowering stage 6.586
SRP132670SRR6706286Control12.256
SRR6706287Light intensity 50%15.313
SRR6706288Light intensity 20%13.901
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.657
CNS0095593Slightly white alabastrum(diploid) 27.078
CNS0095594Slightly white alabastrum(diploid) 35.400
CNS0095595Whole white alabastrum(diploid) 24.476
CNS0095596Whole white alabastrum(diploid) 32.250
CNS0095597Whole white alabastrum(diploid) 45.675
CNS0095598Silvery flower (diploied) 16.056
CNS0095599Silvery flower (diploied) 23.390
CNS0095600Silvery flower (diploied) 37.559
CNS0095601Golden flower (diploid) 13.703
CNS0095602Golden flower (diploid) 210.072
CNS0095603Golden flower (diploid) 39.683
CNS0095604Slightly white alabastrum(tetraploid) 17.798
CNS0095605Slightly white alabastrum(tetraploid) 25.801
CNS0095606Slightly white alabastrum(tetraploid) 316.192
CNS0095607Whole white alabastrum(tetraploid) 15.781
CNS0095608Whole white alabastrum(tetraploid) 22.435
CNS0095609Whole white alabastrum(tetraploid) 37.297
CNS0095610Silvery flower (tetraploid) 16.521
CNS0095611Silvery flower (tetraploid) 29.813
CNS0095612Silvery flower (tetraploid) 312.033
CNS0095613Golden flower (tetraploid) 17.144
CNS0095614Golden flower (tetraploid) 210.533
CNS0095615Golden flower (tetraploid) 37.949
CRA001975CRR073297Stem 19.987
CRR073298Stem 210.359
CRR073299Stem 316.768
CRR073300Leaf 19.188
CRR073301Leaf 28.369
CRR073302Leaf 38.528
CRR073303Juvenile bud 13.846
CRR073304Juvenile bud 25.344
CRR073305Juvenile bud 310.352
CRR073306Third green 16.733
CRR073307Third green 26.432
CRR073308Third green 38.305
CRR073309Second white 19.580
CRR073310Second white 28.258
CRR073311Second white 311.401
CRR073312Silver flowering 112.107
CRR073313Silver flowering 217.472
CRR073314Silver flowering 39.180
CRR073315Gold flowering 113.060
CRR073316Gold flowering 210.064
CRR073317Gold flowering 317.083
CRR073318Tawny withering 18.864
CRR073319Tawny withering 27.036
CRR073320Tawny withering 36.970