Gene detail

Detail information of GWHGAAZE003983

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653644.1	0	PREDICTED: uncharacterized protein LOC100248184 [Vitis vinifera]
Swissprot	tr\|P14233\|TGA1B_TOBAC	1E-50	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)
trEMBL	tr\|F6HQP7\|F6HQP7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57128.1}
TAIR10	AT2G40950.1	4E-139	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	108420108	108424043	-
GWHAAZE00000001	mRNA	108420108	108424043	-
GWHAAZE00000001	exon	108420108	108420571	-
GWHAAZE00000001	exon	108422174	108424043	-
GWHAAZE00000001	CDS	108422174	108424043	-
GWHAAZE00000001	CDS	108420108	108420571	-

Transcript Sequence
>GWHTAAZE003989 ATGGCGGACCCAACGGTCGCCGATCCAATCCCTCAAGACCCTAACAATCTAATCGCTACCAATGACTTTGAACAAACCCTAGCCGTACCACCTCTCGACCCAATCTTCTTCTCAGAAAATCCTGATCTCTCCGATAATTTCATCTCATTTGACGCCGATGTTGAGGACTTCGATTTTACCTTCGACGATTTATTCCTCAATAATTCCACCAATTGCACCTCATCATCATCATCATCCCTTTCGAAACAGCCCCATTTATCATCCGATCCGGAAATTTGTGAGGAATTTGGGGATCAGAGCTCAAGTGGTGTTAGGGTTTTGGATACGTCGTCTCCGGAATTATGCGATGTTTCTGGATTTCTCAACTTTCCTTCTTCGAATTCCGGTGAATTTAACCAGGATTGTTCGCAGGAATCTGGCTGTAAAGGCTCTGATGTTGTTCCTAGGGTTTTGAATTGTTCCTCACTGGACAATCTGGATGTTCCTAGGGTTTCGAATTGTTCTTCGCCGGAATCGGGGACTCATAATCAGGAAGTTTGTGGTCCGGTATCCTCACAGGGTTCAGGCAATTTTCACTCCGGTGGATCGGAAGGTCTGAATTATCCATCTCCAGATTCTGATATTCGTGATCAATCTGGTGATTCTTCTCTTAATTCTAAAATTGATCAGAAGGTTAAGTTGGAAGAATTGGGGAAAAATTGTTTGATGAAGAGGAAGAAGGAGAATGAGGATGTGAACTCAGAATTGAGGACGAGTAAGTATAGGAGGTCAAATGTAGCGGAAAATGGGGATATGTCGAATGGTTTGAATTCGACAAATGATGAGGAAGAGAAGAGGAAGGCAAGGTTGATGAGGAACCGTGAAAGCGCACAACTTTCTAGACAGAGGAAGAAGCATTATGTTGAGGAATTGGAGGATAAAGTTAGGGCAATGCATTCCACAATTCAAGATTTGAATGCTAAGATTTCATATGTAGTGGCCGAAAATGCAACCTTGAGGCAACAATTGAGTGGTGGTGCTGTGTGCCCGCCCCAAGTGCCGCCTCCGGGTATGTACCCACATCCACCAATGGCGCCCATGGGGTATCCATGGATGCCATGTCCTCCATATGTTGTGAAACCGCAAGGGTCTCAAGTGCCATTAGTTCCTATTCCTAGATTGAAACCTCAACAGCCACCCACAGTTTCAACTCCAAAGACCAAGAAAGTTGAGAGTAAGAAAAGTGATGGTAAAACTAAGAAGGTTGCTAGTGTTAGTATTTTGGGTTTGTTGTTCTTTATGCTACTTTTTGGTGGCTTGCTTCCTATGGTGAATGTAAATTATGGAAGAATTAGAGTTTCTTTCTCTGGTGGGTCAGATTATAGTGAGAATAGGCATGGGAGGGTGTTGACTGTTAATGATCATGTCAATGGAACTAACCATAACATAGGGATAGGATTCTCTAAGGAGAAATTTGGAGGTGGAAAAGATTTTACAGATACTTCAAATTGTGAGCAAAAAGGAGGATCACATCCTTTGCCTGGATCGGACGAGATTGTTCGACCGGGCAATGCTAGCGAGCCTCTTGTTGCATCTCTATATGTTCCAAGAAATGATAAACTTGTGAAGATTGATGGCAATTTGATAATACATTCTGTTCTGGCTAGTGAGAAAGCTATGGCATCTCGTGATGAGCCGAAAACAGAGACTAGTGAAGAGACTGGTTTGGCAGTTGCTTTGGCTCCAGTTGGTTCTATTCCTGGGATGGGGAGGAATGGAAGACAACCCCACTTGTACAAGGCTCTTCCCTCTGGTTCTGCAGGTAAGGACAATTTGGACTCACCGGCGGCTGATGGTAAACTGCAACAATGGTTCCGTGAAGGTCTTGCAGGCCCAATGTTAAGTTCAGGCATGTGCACCGAAGTATTCCAGTTTGATGTCTCGCCTGCTCCGGGATCCATAATTCCCGCCACCTCGGTTCAAAACATTTCTGCAGAGGAGCATGGACAAAATTCCACCACACACCTCAACAAAGTAAAAAACCGAAGGATCCTCCATGGTCTCCCAATTCCCCTCCCAGGTACGGGCCACAACATTACCAAAGAACATGGGGGACCCAATTCACAGAAAGAGAGCCCTCAAAACAGAAACAACACTGTCTCCTCCTCCTCTATGGTAGTTTCGGTCCTTTTTGATCCCCGAGAAGCTGGCAATGGTGACGGCGATGGTGTTATGGGATCCAAGTCCCTCTCAAGGATTTTCGTTGTGGTGCTTTTGGACAGCGTTAAGTATGTGACTTACTCGTGTGTGCTTCCGTTAATGGGATCATCGAGCCCTCATTTAGTGACTACTTGA

Network for GWHGAAZE003983

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	275	336	3.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.157
	SRR3591706	second leaf	21.294
	SRR3591707	mature leaf	17.899
	SRR3591708	Shoot apex	40.005
	SRR3591709	Stem	74.827
	SRR3591710	White floral bud	43.270
	SRR3591711	White flower	51.929
	SRR3591712	Green floral bud	31.186
	SRR3591713	Yellow flower	22.572
SRP173429	SRR8316895	Juvenile bud stage	41.254
	SRR8316896	Juvenile bud stage	45.387
	SRR8316897	Juvenile bud stage	26.538
	SRR8316894	Third green stage	14.633
	SRR8316900	Third green stage	30.382
	SRR8316901	Third green stage	29.464
	SRR8316898	Complete white stage	5.413
	SRR8316899	Complete white stage	46.392
	SRR8316903	Complete white stage	11.619
	SRR8316902	Silver flowering stage	8.281
	SRR8316904	Silver flowering stage	9.564
	SRR8316905	Silver flowering stage	4.663
	SRR8316906	Gold flowering stage	14.904
	SRR8316907	Gold flowering stage	19.312
	SRR8316908	Gold flowering stage	16.531
SRP132670	SRR6706286	Control	21.572
	SRR6706287	Light intensity 50%	20.198
	SRR6706288	Light intensity 20%	16.705
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.071
	CNS0095593	Slightly white alabastrum(diploid) 2	28.737
	CNS0095594	Slightly white alabastrum(diploid) 3	30.467
	CNS0095595	Whole white alabastrum(diploid) 2	18.976
	CNS0095596	Whole white alabastrum(diploid) 3	12.358
	CNS0095597	Whole white alabastrum(diploid) 4	17.973
	CNS0095598	Silvery flower (diploied) 1	70.311
	CNS0095599	Silvery flower (diploied) 2	35.538
	CNS0095600	Silvery flower (diploied) 3	33.856
	CNS0095601	Golden flower (diploid) 1	46.924
	CNS0095602	Golden flower (diploid) 2	53.542
	CNS0095603	Golden flower (diploid) 3	48.519
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.869
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.083
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.765
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.086
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.687
	CNS0095610	Silvery flower (tetraploid) 1	27.176
	CNS0095611	Silvery flower (tetraploid) 2	24.399
	CNS0095612	Silvery flower (tetraploid) 3	11.830
	CNS0095613	Golden flower (tetraploid) 1	15.413
	CNS0095614	Golden flower (tetraploid) 2	24.762
	CNS0095615	Golden flower (tetraploid) 3	15.373
CRA001975	CRR073297	Stem 1	33.465
	CRR073298	Stem 2	31.832
	CRR073299	Stem 3	39.302
	CRR073300	Leaf 1	27.849
	CRR073301	Leaf 2	44.879
	CRR073302	Leaf 3	21.215
	CRR073303	Juvenile bud 1	26.332
	CRR073304	Juvenile bud 2	19.108
	CRR073305	Juvenile bud 3	57.403
	CRR073306	Third green 1	10.479
	CRR073307	Third green 2	10.309
	CRR073308	Third green 3	11.240
	CRR073309	Second white 1	8.717
	CRR073310	Second white 2	8.309
	CRR073311	Second white 3	7.908
	CRR073312	Silver flowering 1	11.446
	CRR073313	Silver flowering 2	19.995
	CRR073314	Silver flowering 3	17.387
	CRR073315	Gold flowering 1	18.314
	CRR073316	Gold flowering 2	31.748
	CRR073317	Gold flowering 3	30.660
	CRR073318	Tawny withering 1	37.815
	CRR073319	Tawny withering 2	43.994
	CRR073320	Tawny withering 3	57.337