Gene detail

Detail information of GWHGAAZE003974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO57432.1	0	hypothetical protein CISIN_1g005427mg [Citrus sinensis]
COG	YP_144860.1	5E-24	serine/threonine protein kinase
Swissprot	tr\|Q940A2\|P2C31_ARATH	0	Probable protein phosphatase 2C 31
trEMBL	tr\|A0A067F1Q3\|A0A067F1Q3_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO57432.1}
TAIR10	AT2G40860.1	0	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	108224125	108241155	-
GWHAAZE00000001	mRNA	108224125	108241155	-
GWHAAZE00000001	exon	108224125	108224575	-
GWHAAZE00000001	exon	108225953	108226048	-
GWHAAZE00000001	exon	108226776	108226880	-
GWHAAZE00000001	exon	108227561	108227780	-
GWHAAZE00000001	exon	108227887	108227956	-
GWHAAZE00000001	exon	108229186	108229343	-
GWHAAZE00000001	exon	108231586	108232148	-
GWHAAZE00000001	exon	108232505	108232556	-
GWHAAZE00000001	exon	108235651	108235874	-
GWHAAZE00000001	exon	108236005	108236072	-
GWHAAZE00000001	exon	108239540	108239706	-
GWHAAZE00000001	exon	108240469	108240586	-
GWHAAZE00000001	exon	108241125	108241155	-
GWHAAZE00000001	CDS	108241125	108241155	-
GWHAAZE00000001	CDS	108240469	108240586	-
GWHAAZE00000001	CDS	108239540	108239706	-
GWHAAZE00000001	CDS	108236005	108236072	-
GWHAAZE00000001	CDS	108235651	108235874	-
GWHAAZE00000001	CDS	108232505	108232556	-
GWHAAZE00000001	CDS	108231586	108232148	-
GWHAAZE00000001	CDS	108229186	108229343	-
GWHAAZE00000001	CDS	108227887	108227956	-
GWHAAZE00000001	CDS	108227561	108227780	-
GWHAAZE00000001	CDS	108226776	108226880	-
GWHAAZE00000001	CDS	108225953	108226048	-
GWHAAZE00000001	CDS	108224381	108224575	-
GWHAAZE00000001	three_prime_UTR	108224125	108224380	-

Transcript Sequence
>GWHTAAZE003980 ATGTCTGATTATCTGTGCATATATGAACAGGGGGCAGAGAGTGTGGTATATGAAGCAACCTTGGATGGAGAAAGGGTTGCAGTGAAGAAACCCATATTGTCTACTTCTGAAGACATTGATAAATTTCACAAGGAACTTCAATTGCTATGCAAGTTAGATCATCCAGGAATAGCCAAGCTAGTTGCGGCACATGCCAAACCGCCAAACTACATGTTTTTCTTCCAATTCTTTGAGTCTGGTAGTCTTGCGGAGAAACTACACGTGGAAGAATGGAGTCCCAGTATTGACCAGGTGCTCAAAATCACAGTACATCTAGCAAGGGCTCTGCTGTATCTACACAACCTTGGGATCATCCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAACAACCTTCACCCACATCTGTCAGACTTTGGTTTAGCAGAATACAAGAAAGATCTTAAACAGGTTTCTGTTCAAAACTGGCGATCATCTGGCAAGCCAACTGGTGGTTTCCATAAGAAAAATATGGTGGGCACACTTATATACATGGCACCCGAAATATTGAGGAAGGAGATACATACTGACAAATCAGATGCTTACAGCTTTGGGATATTAATCAATGAGCTTCTTACTGGTGTTGTCCCATATACAGATCTTCGTGCAGAAGCCCAGGCACACACTGTTCTGGAAATGAACTATACCGAGTCGCAACTTACTGCTGCTGTGGTTTCACAAGGACTACGACCCGCTCTTGCAGGAACCGAGTCAGGTGCACCATCAACTTTATTGTCTCTGATAGAAAGATGCTGGGACCAAAATCCCCAAAAGAGGCCTTCTTTTGATCATATAGTTGTGGAACTTGAATCCATGTTGGGAAGGGTAAAAGAGGAAAAGGCCCTTGCTGAACCATTTATATCTTCTGATAATCATGATACCGTTAATCCTCGATCTTATCAACAAAGTATCAACTGGTTTACTCTGGGTGAAGACTTGTCAAAGAAAAGTTCTCCTGTCCCTGAATCTGGTGTAAGAATCTGGCTTGAGTCTTTAAATGATTCCTTGAAATACCAACCTGTTCTATCTTGGGGATCTTTTGCTACTTGTGGGAGAAGGGAGACTATGGAGGATACACATTTCCTTATGCCTCGAATCAGCGATGACAATGATATACATTTATTTGGAATCTTCGACGGTCATCGAGGTGTACCATTTCACATCTACTTTCAATCATTATGGGATGCATCGTGCTTTCTGCAGAATCCTTCTCGTGCTATAGCAAAGTCTTGCCATGCTCTAGCCTGGCATTGTCATGCTATTGTTGATCCACCTCGTGCTTCAGAATCTACCTTGTGCTGGATGATTCTTCCTCATGCTCGATGCCTCGCGCTCCAAGGTGCAGCAGCTGCTGAGTTTTCAGCTCGAGCACTACCGAGATTCTTGCAAAATTTGGGACCTGCGAGCAGTCCCTCCAATGCACTACTAGAAGCATTTGTGAAGACAGATGTTGCATTTAGGAATGAACTGGATTCTCGTCGTAAAATCAAGGGAATTATACAGAAGGACTGGCACCCTGGTTGTACTGCAGTTGCTGCTCTTCTAGTTAGAAACAAGCTTTTTGTTGCTAATGCTGGTGATTGCAGGACAATTTTGTGTCGAGCCGGTAGTTCCTATGCTCTAAGTAGGGATCATGTTGGAAGTTGTGCTGAAGAGAGAGAGCGTGTTATCAGTGCTGGTGGGCATGTCAAATGGCAGGTTGACACGTGGAGGGTTGGTCCTGCTGCTCTCCAGGTCACGCGTTCAATTGGTGATGATGATCTGAAGCCTGCTGTGACTGCAGAACCTGAGATAACTGAAACCTTACTGTCTGCGGAGGATGAATACCTAGTAATGGCTAGCGATGGACTGTGGGATGTGATGAGCAATGAAGAAGTAGTGAGCATAATCAAAGACACCGTAAAGGAGCCTAGTATGTGTTCAAAGAGATTGGCTACCGAAGCAGCCGGACGCGGCAGCAAAGACAACATTACGGTCATTGTTGTCTTCCTTCGCCCCGTCTCTACGGCTGAGAGAATTTATTAGATAGGGCTATTATCAGCCATACCGCCCTTTCTTGAGAACGGTGGGCCAATTATGTGTAGTTAAATGGAATATGTATCCATAAATTTATTCGTTTATTATTGGCAACCTTTGCCCAGTCTCTACTGCAGATAGAATTTACTAGCTTTGTTTAGCTTAGCCAGTAGCTTTCTCCATTTTTTCCTCAGACAAATCTGTGTAGAATGTGGAAATGTATCGATAATTTTATTTATTTATTATTATTTTAATTTTTTTTTAA

Network for GWHGAAZE003974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	280	7.00E-46
PF00481.22	PP2C	460	671	4.90E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.882
	SRR3591706	second leaf	11.883
	SRR3591707	mature leaf	19.496
	SRR3591708	Shoot apex	13.249
	SRR3591709	Stem	15.241
	SRR3591710	White floral bud	6.902
	SRR3591711	White flower	7.039
	SRR3591712	Green floral bud	10.430
	SRR3591713	Yellow flower	9.926
SRP173429	SRR8316895	Juvenile bud stage	8.280
	SRR8316896	Juvenile bud stage	12.539
	SRR8316897	Juvenile bud stage	11.933
	SRR8316894	Third green stage	4.321
	SRR8316900	Third green stage	9.031
	SRR8316901	Third green stage	10.473
	SRR8316898	Complete white stage	3.192
	SRR8316899	Complete white stage	9.973
	SRR8316903	Complete white stage	5.665
	SRR8316902	Silver flowering stage	3.146
	SRR8316904	Silver flowering stage	4.000
	SRR8316905	Silver flowering stage	1.974
	SRR8316906	Gold flowering stage	8.380
	SRR8316907	Gold flowering stage	6.201
	SRR8316908	Gold flowering stage	12.571
SRP132670	SRR6706286	Control	9.392
	SRR6706287	Light intensity 50%	10.332
	SRR6706288	Light intensity 20%	10.794
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.033
	CNS0095593	Slightly white alabastrum(diploid) 2	11.497
	CNS0095594	Slightly white alabastrum(diploid) 3	14.059
	CNS0095595	Whole white alabastrum(diploid) 2	10.639
	CNS0095596	Whole white alabastrum(diploid) 3	8.766
	CNS0095597	Whole white alabastrum(diploid) 4	9.733
	CNS0095598	Silvery flower (diploied) 1	9.024
	CNS0095599	Silvery flower (diploied) 2	8.650
	CNS0095600	Silvery flower (diploied) 3	4.955
	CNS0095601	Golden flower (diploid) 1	7.857
	CNS0095602	Golden flower (diploid) 2	6.591
	CNS0095603	Golden flower (diploid) 3	6.989
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.680
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.259
	CNS0095610	Silvery flower (tetraploid) 1	5.184
	CNS0095611	Silvery flower (tetraploid) 2	6.115
	CNS0095612	Silvery flower (tetraploid) 3	5.913
	CNS0095613	Golden flower (tetraploid) 1	5.034
	CNS0095614	Golden flower (tetraploid) 2	5.911
	CNS0095615	Golden flower (tetraploid) 3	3.996
CRA001975	CRR073297	Stem 1	18.738
	CRR073298	Stem 2	13.244
	CRR073299	Stem 3	13.146
	CRR073300	Leaf 1	13.238
	CRR073301	Leaf 2	11.849
	CRR073302	Leaf 3	10.588
	CRR073303	Juvenile bud 1	6.260
	CRR073304	Juvenile bud 2	8.220
	CRR073305	Juvenile bud 3	6.898
	CRR073306	Third green 1	5.675
	CRR073307	Third green 2	4.731
	CRR073308	Third green 3	5.969
	CRR073309	Second white 1	4.880
	CRR073310	Second white 2	5.874
	CRR073311	Second white 3	6.267
	CRR073312	Silver flowering 1	6.204
	CRR073313	Silver flowering 2	4.655
	CRR073314	Silver flowering 3	4.776
	CRR073315	Gold flowering 1	8.895
	CRR073316	Gold flowering 2	11.042
	CRR073317	Gold flowering 3	7.617
	CRR073318	Tawny withering 1	14.164
	CRR073319	Tawny withering 2	13.284
	CRR073320	Tawny withering 3	11.494