Gene detail

Detail information of GWHGAAZE003973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653647.1	0	PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10-like [Vitis vinifera]
COG	YP_643511.1	6E-32	serine/threonine protein kinase
Swissprot	tr\|Q38997\|KIN10_ARATH	0	SNF1-related protein kinase catalytic subunit alpha KIN10
trEMBL	tr\|F6HQQ4\|F6HQQ4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57135.1}
TAIR10	AT3G01090.2	3E-155	SNF1 kinase homolog 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	108185548	108190524	+
GWHAAZE00000001	mRNA	108185548	108190524	+
GWHAAZE00000001	exon	108185548	108185740	+
GWHAAZE00000001	exon	108186164	108186348	+
GWHAAZE00000001	exon	108187398	108187580	+
GWHAAZE00000001	exon	108188019	108188150	+
GWHAAZE00000001	exon	108188230	108188415	+
GWHAAZE00000001	exon	108189060	108189149	+
GWHAAZE00000001	exon	108189220	108189285	+
GWHAAZE00000001	exon	108189737	108189817	+
GWHAAZE00000001	exon	108190198	108190524	+
GWHAAZE00000001	CDS	108185548	108185740	+
GWHAAZE00000001	CDS	108186164	108186348	+
GWHAAZE00000001	CDS	108187398	108187580	+
GWHAAZE00000001	CDS	108188019	108188150	+
GWHAAZE00000001	CDS	108188230	108188415	+
GWHAAZE00000001	CDS	108189060	108189149	+
GWHAAZE00000001	CDS	108189220	108189285	+
GWHAAZE00000001	CDS	108189737	108189817	+
GWHAAZE00000001	CDS	108190198	108190524	+

Transcript Sequence
>GWHTAAZE003979 TTTGAAATGGATGGAACAAAGGCTAAGAGGAGTAAATCACCTGAACATGCTCTATCAAACTATAGGATGGGGAAAACCCTTGGCGTTGGTGCATTTGGTAAAGTGAAGGTTGCACTTCATACGTTAACAGGGCTCAAAGTTGCTATAAAGATCCTTGATCGTCAATCGATTAATTTTGAAGCAGCCGAGAAAGTGAGACGAGAAATCAATATTTTGAGGCTACTTTCTCATCCTCACGTAGTTCGCCTCTATGAGGTCATCGAGACTCGGGCCAATATTTATATGATCATGGAGTATATGAACTCGGGTGATCTATATGATTTCATTATTGAGAATGTTAGACTCGAGGAAGATGAGGCTCGCCACTTCTTTCAACAGATTATTTCAGGCGTTGAATTTTGCCACCTCCACAAGGTGGTTCATCGAGATCTGAAGCCTGAGAACCTTCTTTTGGATTCCAAATGCAACGTAAAGATTGCCGACTTTGGACTTGGCAATGTCACACGTGATGGTCATTTTCTTAAAACGAACTGCGGTAGTCCTAATTATGCTGCTCCAGAGGTCATTGCTGAACAACTGTATGCTGGTCCTGAAGTTGATGTTTGGAGTTCTGGAGTTATCTTGTATGCTCTGCTTTGTGGAAGGCTTCCTTTCGATGATGACAATATTCCGGGACTATTTGCGAAGATAAAGAATGGAGCATACACATATCCAACTCATATATCTCATGGCGCCAATGATTTGATTGCACGGATACTTGTGGTGGATCCAGTAAACCGCATTTCCATTCCTGAAATACATCAACATCCTTGGTTCCAACAGCATATTCCTAGATATATAGCTATTCGCTCTCCTGATATATTTTATAACACAGAAAAGATTGATGAGGATATTGTCTCAAAGATGGTTAAAATAGGGTTCGACAACCGAGAAGTGGTTAGGTCTCTCCATAGCAGTTATCAAAATGAGGCAACGGTGACATATTATCTGTTATTGCATAACCGCTTTGGAGATCACTGCAGCTACGGATCCTTGCCAGAGGAATGCATTGGTCGTCCAGAAATCTACGTGAGATCACTCCCTCCTGCTCAAAAGAAATGGGCACTTGGCTTTAAGTCTCAAGCACCTCCCCATGAAACGCTGACAAATGTTCTAAGGGTTTTTGAGAGCTTACAGGTGAGATGGAAGAAGATAGGACATTATAACATGAAATGTCTGTGGCTACCCCCACCTTCTACCTATTCCAAAGCTATGGATGTTGTTGGCCTTCCTCAAGGAAAACTCTTCCATGGCCTTGAATTGTCATTAGCAAGCGTGAGCAGTATGCCTGTTAGGTCAAAATATGCTGTGAAGTTTGAAATTCAGGTAATGAGTTGCCCATATTTTTGCTTTTTCTTTACTGGTGGTACAGCAAATCATAAGGAGAAAAAGCGGAGTTTTTGA

Network for GWHGAAZE003973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	21	272	2.90E-75
PF00627.32	UBA	294	330	6.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_AMPK

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.590
	SRR3591706	second leaf	6.762
	SRR3591707	mature leaf	2.163
	SRR3591708	Shoot apex	6.561
	SRR3591709	Stem	34.952
	SRR3591710	White floral bud	20.470
	SRR3591711	White flower	17.705
	SRR3591712	Green floral bud	14.199
	SRR3591713	Yellow flower	3.490
SRP173429	SRR8316895	Juvenile bud stage	5.935
	SRR8316896	Juvenile bud stage	7.374
	SRR8316897	Juvenile bud stage	2.255
	SRR8316894	Third green stage	5.088
	SRR8316900	Third green stage	13.917
	SRR8316901	Third green stage	13.844
	SRR8316898	Complete white stage	4.574
	SRR8316899	Complete white stage	26.460
	SRR8316903	Complete white stage	9.087
	SRR8316902	Silver flowering stage	1.321
	SRR8316904	Silver flowering stage	1.473
	SRR8316905	Silver flowering stage	0.150
	SRR8316906	Gold flowering stage	0.487
	SRR8316907	Gold flowering stage	0.776
	SRR8316908	Gold flowering stage	0.507
SRP132670	SRR6706286	Control	6.402
	SRR6706287	Light intensity 50%	6.474
	SRR6706288	Light intensity 20%	6.606
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.315
	CNS0095593	Slightly white alabastrum(diploid) 2	3.067
	CNS0095594	Slightly white alabastrum(diploid) 3	4.039
	CNS0095595	Whole white alabastrum(diploid) 2	3.669
	CNS0095596	Whole white alabastrum(diploid) 3	4.663
	CNS0095597	Whole white alabastrum(diploid) 4	5.169
	CNS0095598	Silvery flower (diploied) 1	2.780
	CNS0095599	Silvery flower (diploied) 2	4.638
	CNS0095600	Silvery flower (diploied) 3	4.229
	CNS0095601	Golden flower (diploid) 1	3.682
	CNS0095602	Golden flower (diploid) 2	2.468
	CNS0095603	Golden flower (diploid) 3	3.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.151
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.658
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.647
	CNS0095610	Silvery flower (tetraploid) 1	6.233
	CNS0095611	Silvery flower (tetraploid) 2	3.460
	CNS0095612	Silvery flower (tetraploid) 3	4.429
	CNS0095613	Golden flower (tetraploid) 1	1.440
	CNS0095614	Golden flower (tetraploid) 2	4.904
	CNS0095615	Golden flower (tetraploid) 3	1.708
CRA001975	CRR073297	Stem 1	3.809
	CRR073298	Stem 2	3.059
	CRR073299	Stem 3	3.776
	CRR073300	Leaf 1	4.342
	CRR073301	Leaf 2	4.043
	CRR073302	Leaf 3	6.191
	CRR073303	Juvenile bud 1	6.129
	CRR073304	Juvenile bud 2	8.297
	CRR073305	Juvenile bud 3	5.644
	CRR073306	Third green 1	0.299
	CRR073307	Third green 2	0.557
	CRR073308	Third green 3	0.465
	CRR073309	Second white 1	0.429
	CRR073310	Second white 2	0.964
	CRR073311	Second white 3	0.406
	CRR073312	Silver flowering 1	0.352
	CRR073313	Silver flowering 2	0.737
	CRR073314	Silver flowering 3	0.100
	CRR073315	Gold flowering 1	1.097
	CRR073316	Gold flowering 2	2.094
	CRR073317	Gold flowering 3	1.133
	CRR073318	Tawny withering 1	15.474
	CRR073319	Tawny withering 2	13.931
	CRR073320	Tawny withering 3	17.401