Gene detail

Detail information of GWHGAAZE003967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011070204.1	9.7977E-166	PREDICTED: serine/threonine-protein kinase CDL1-like [Sesamum indicum]
COG	YP_007314948.1	5E-16	serine/threonine protein kinase
Swissprot	tr\|Q9LSE1\|CDG1_ARATH	1E-52	Serine/threonine-protein kinase CDG1 {ECO:0000305}
trEMBL	tr\|A0A068V9H5\|A0A068V9H5_COFCA	2E-118	Coffea canephora DH200=94 genomic scaffold, scaffold_147 {ECO:0000313\|EMBL:CDP17159.1}
TAIR10	AT5G56790.1	1E-65	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	108046174	108053175	-
GWHAAZE00000001	mRNA	108046174	108053175	-
GWHAAZE00000001	exon	108046174	108046260	-
GWHAAZE00000001	exon	108047313	108047462	-
GWHAAZE00000001	exon	108047564	108047782	-
GWHAAZE00000001	exon	108047882	108048024	-
GWHAAZE00000001	exon	108048664	108049035	-
GWHAAZE00000001	exon	108049906	108050075	-
GWHAAZE00000001	exon	108051441	108051538	-
GWHAAZE00000001	exon	108052510	108052652	-
GWHAAZE00000001	exon	108052983	108053175	-
GWHAAZE00000001	CDS	108052983	108053175	-
GWHAAZE00000001	CDS	108052510	108052652	-
GWHAAZE00000001	CDS	108051441	108051538	-
GWHAAZE00000001	CDS	108049906	108050075	-
GWHAAZE00000001	CDS	108048664	108049035	-
GWHAAZE00000001	CDS	108047882	108048024	-
GWHAAZE00000001	CDS	108047564	108047782	-
GWHAAZE00000001	CDS	108047313	108047462	-
GWHAAZE00000001	CDS	108046174	108046260	-

Transcript Sequence
>GWHTAAZE003973 ATGTCAAGAAAAGTTGAGAGGGTGTTGGTAATCCAAGGCGCGTCTGGGGAGCCCAGTACTAACGCTATTAGGTGCACACTGCAATCGTTGTCACTCAAGCCTGGTGACAAAATCAAGATCATTAGGGTTGTTCAGCCGTTCAGTACTACTGCTAAGACATCGTCATCATCTTTCTTGGGATGTGGGATAGTAGTACGATACAAAATCAGACTACACTCGAGTGTAACGATCAAGAACAAACAAAGGGGCATAGAGGAATATATCACAGAAAAGGAAGATGAGTATCAGAACAGTGCAGAGATCAAGGAGATACGTAGGCTGCTTCAGATGCAACAGATTGATTTGGACACAGCGGTGGAAGCGGCACACTCACTGAAAGAGGTTGCTGTACAAGCTGCCATGGAATTACAAGCAACTTGGCTGATCCTTGACAGGAACATGAAGAAAGACGAGAAATACTTGAAGGAGAATCTCACATGTGGAATATTAAGAATGAAACACAATGGCCATGTAGAACATGTACGAGAGCCAAAGGAAGTGGATCGAGTAATAATTTCAGAAAGAAGCTATAATATTAGACATGTCAATTTGGAAACTTCTACAAGTGAGGAAGAAGAAATATTCAAGAACGCTACTTGTTCAATGTGCAAGAACAGAAGGCCGAGGATCGGACTTTTTAGGAAATTTGAATACTCTGAGCTTCAGTTTGCTACTGAGGGTTTCTCAGAACAAAATGTGCTATCCCAACGCGGAAGGGAGATTTACAAAGGACGCTTAATCGACGGGCAAATGATTGTTATTAGAAAAAGCAATTTAGCTAACATCAAAGAGGAGGAATTTCAATCGCGTGTTCAAATGCTTGGGATGGCCAGACACGAGAATGTGGCGATGTTGTTGGGTTCATGCTCACAAAAGCATCTTAGGCTGCTAGTTTATGAGTACGTCTGCAACGGTTCTCTGAACATGCATCTCTTGAGAAGAAGTAAACAACTGACATGGGAAAGAAGAATGAAAATAGCAAGGGGAGTTGCCAAAGGATTAATGTACCTTCACGGCAACAACATTTTCGGAAACCTTAGACCAAACAACATCCTAATAACCCATGACTATGAGCCTCTGTTGACCAACATTGGACTCGCAAGAAATCAGTATGAGGGGTCGGACCACTCGTCGGAAACAAGGGTCCTCAAGACTTTCGAATATTTGGCACCCGAATATGAAGAAACGGGTCTAAATTCAAGCAAAGCAGATATTTATTCATTCGGGGTGGTTCTGCTCGAACTGATCACAGGCCGAAAGACTATAGAAGAGACGGATGGGCAAAGCTTTTTAAGATGGGCAAGGCCACTGGTGGAGGAGAAAAGGTATGGAGAATTAGCAGACCCTAAATTGCCTGAGCCAGCTGATATACACCAACTCTTTTGCACGGTCCGTGTCGCGGAAAAATGTCTAAGCACCAATCCTTGGTCGAGACACCCAATAGAAAAGGTGGTGGATGAACTTACCTGCATAATTCAAGGTAAAAGAATCGAAGACTTCTCCCCGACTGAATCCGAAATGCTCAAGAAGATCTGA

Network for GWHGAAZE003967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	270	499	1.20E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.489
	SRR3591706	second leaf	0.269
	SRR3591707	mature leaf	0.113
	SRR3591708	Shoot apex	0.104
	SRR3591709	Stem	1.184
	SRR3591710	White floral bud	1.065
	SRR3591711	White flower	1.845
	SRR3591712	Green floral bud	0.518
	SRR3591713	Yellow flower	0.227
SRP173429	SRR8316895	Juvenile bud stage	2.538
	SRR8316896	Juvenile bud stage	0.995
	SRR8316897	Juvenile bud stage	0.268
	SRR8316894	Third green stage	0.352
	SRR8316900	Third green stage	0.405
	SRR8316901	Third green stage	0.323
	SRR8316898	Complete white stage	0.033
	SRR8316899	Complete white stage	0.406
	SRR8316903	Complete white stage	0.127
	SRR8316902	Silver flowering stage	0.122
	SRR8316904	Silver flowering stage	0.204
	SRR8316905	Silver flowering stage	0.055
	SRR8316906	Gold flowering stage	0.266
	SRR8316907	Gold flowering stage	0.136
	SRR8316908	Gold flowering stage	0.021
SRP132670	SRR6706286	Control	0.448
	SRR6706287	Light intensity 50%	0.611
	SRR6706288	Light intensity 20%	0.472
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.364
	CNS0095593	Slightly white alabastrum(diploid) 2	0.393
	CNS0095594	Slightly white alabastrum(diploid) 3	1.464
	CNS0095595	Whole white alabastrum(diploid) 2	0.639
	CNS0095596	Whole white alabastrum(diploid) 3	0.139
	CNS0095597	Whole white alabastrum(diploid) 4	0.416
	CNS0095598	Silvery flower (diploied) 1	1.645
	CNS0095599	Silvery flower (diploied) 2	1.554
	CNS0095600	Silvery flower (diploied) 3	0.443
	CNS0095601	Golden flower (diploid) 1	1.045
	CNS0095602	Golden flower (diploid) 2	0.716
	CNS0095603	Golden flower (diploid) 3	0.484
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.780
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.460
	CNS0095610	Silvery flower (tetraploid) 1	0.134
	CNS0095611	Silvery flower (tetraploid) 2	0.392
	CNS0095612	Silvery flower (tetraploid) 3	0.443
	CNS0095613	Golden flower (tetraploid) 1	0.169
	CNS0095614	Golden flower (tetraploid) 2	0.028
	CNS0095615	Golden flower (tetraploid) 3	0.405
CRA001975	CRR073297	Stem 1	2.925
	CRR073298	Stem 2	1.671
	CRR073299	Stem 3	0.844
	CRR073300	Leaf 1	0.584
	CRR073301	Leaf 2	0.409
	CRR073302	Leaf 3	0.082
	CRR073303	Juvenile bud 1	0.038
	CRR073304	Juvenile bud 2	0.057
	CRR073305	Juvenile bud 3	0.309
	CRR073306	Third green 1	0.107
	CRR073307	Third green 2	0.009
	CRR073308	Third green 3	0.240
	CRR073309	Second white 1	0.204
	CRR073310	Second white 2	0.211
	CRR073311	Second white 3	0.106
	CRR073312	Silver flowering 1	0.317
	CRR073313	Silver flowering 2	0.014
	CRR073314	Silver flowering 3	0.069
	CRR073315	Gold flowering 1	0.174
	CRR073316	Gold flowering 2	0.544
	CRR073317	Gold flowering 3	0.210
	CRR073318	Tawny withering 1	0.295
	CRR073319	Tawny withering 2	0.190
	CRR073320	Tawny withering 3	0.177