Gene detail

Detail information of GWHGAAZE003964

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010659873.1	PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Vitis vinifera]
Swissprot	tr\|Q9SR02\|MED14_ARATH	Mediator of RNA polymerase II transcription subunit 14
trEMBL	tr\|F6HTQ6\|F6HTQ6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58067.1}
TAIR10	AT3G04740.1	RNA polymerase II transcription mediators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107938867	107954346	-
GWHAAZE00000001	mRNA	107938867	107954346	-
GWHAAZE00000001	exon	107954137	107954346	-
GWHAAZE00000001	exon	107950859	107951938	-
GWHAAZE00000001	exon	107947663	107947751	-
GWHAAZE00000001	exon	107946605	107946779	-
GWHAAZE00000001	exon	107943574	107944564	-
GWHAAZE00000001	exon	107941999	107942963	-
GWHAAZE00000001	exon	107940499	107941526	-
GWHAAZE00000001	exon	107938867	107939677	-
GWHAAZE00000001	CDS	107954137	107954346	-
GWHAAZE00000001	CDS	107950859	107951938	-
GWHAAZE00000001	CDS	107947663	107947751	-
GWHAAZE00000001	CDS	107946605	107946779	-
GWHAAZE00000001	CDS	107943574	107944564	-
GWHAAZE00000001	CDS	107941999	107942963	-
GWHAAZE00000001	CDS	107940499	107941526	-
GWHAAZE00000001	CDS	107938867	107939677	-

Transcript Sequence
>GWHTAAZE003970 ATGACGGAGTTAGGGCAACAAACGGTGGAATTCTCGACTCTAGTGAGTCGAGCCGCCGAGGATTCGTACCTGTCCTTGAAGGAATTGGTGGAGAAATCGAAATCCTCGGAAATGGCGGATTCCGAGAAGAAGATCAGTATCCTTAAGTACTTGGTGAAGACTCAACAGCGAATGCTTAGGCTCAATGTTCTTGCTAAGTGGTGTCAACAGGTTCCATTGATACAGTATTGTCAACAACTTACATCCACTTTATCAAGCCATGATACATGCTTTACGCAAGCTGCAGACTCAATGTTTTTCATGCATGAGGGTCTACAGCAAGCTCGTGCTCCAATCTATGATGTTCCTTCTTCAATTGAAGTTCTGCTTACAGGGACTTACCAGCGTTTACCCAAATGCATAGAAGATGTCGGTATTCAGAGCACATTAACAAAGGATCAGCAAAAGCCAGCTTTAAAAAAGTTAGACGTACTCGTGAGGTCGAAATTACTCGAGGTCTCACTACCGAAAGAAATTTCCGAAGTCAAGGTTTCTGATGGTACTGCATTGTTACGTGTGGATGGGGAATTTAAAGTTTTGGTCACCCTCGGTTATCGAGGACACATGTCCATGTGGAGAATATTACATTTGGAGCTTCTTGTTGGTGAGAGAAGTGGGCCCGTGAAGCTCGAAGTAACACGGCAACATGTTCTTGGTGACGATTTGGAGCGTAGAATGGCTGCTGCCGAAAATCCATTTGGAACATTGTACAATGTTCTACATGAGCTCTGCATTTCTCTAGTTATGGACACTGTTATTAAACAAGTGCGTTCGCTTCTTCATGGAAGATGGAAAGACGCAATAAAATTCGAGCTCATATATCATGGTAATATGGGACAAGGAGGAAGTGGTGGTTCCATGCAGTTGACTCAAGATGGAGAAGCCGATTCGGCTGGTGTACGAACTCCTGGATTAAAAATTATTTACTGGTTAGATTTTGATAAAAACTCTGGTACATCTGATGGTGGGTTATGTCCGTTTGTAAAAATTGAACCGGGACTAGATCTGCAGATAAAGTGTGTTCATAGCACATTTGTTATCGACCCTCAGACCAACAAGGAGGCTGAATTTTTGATTGACCAAAGTTGCATTGATGTTGAGAAGTTGCTGCTAAGAGCTATATGTTGTAATAGATATACTCGTCTGCTTGAAATCTATAGAGAGCTGGGGAAAAACAGTCATATCTGTCGAGCTCCAGGGGATGTTCTACTTCATTGCCTTGCTGATGAACATGATGCTGACAATAAACAGAAGGAAAATAAACCTAATGCTGAAGGAAAGGAAGTTCTACGTGTGCGTGCTTATGGTTCATCATTTTTCACCCTTGGAATAAATATAAGGAATGGACGCTTTCTTCTTCTCTCATCCAAGAATGTCATTTCATCTTCTGCACTGCTGGAATGTGAAGAAGCTTTAAACGATGGGAATATGACAGCGGCTGAAGTTTTTATGAGATTGAGGAGCAAAAGTATTCTACATTTATTTGCATGTATTGGTAGGTTCTTAGGCCTTCAGGCTTCAAACCTGTATATTATTTTACATAATATGCACAATGAATTGGAGAACTTTTTCCCCTTGCAGGTTTACGAGAATGGATTCTCTGCAGTGAAGGTCCCAAAGAACGCTTTGAATGGTTCAAACATGATGCTTATGGGGTTTCCAGAATGTGGTAGTTCTTATTTTTTGCTGATGCAACTCGATAAGGATTTCAAACCTATTTTCAAATTACTAGAGACTCAGCCAGATCCGTCTGAAAAAGCTCAATCTTTGGGTGACTCGAATAATGTAATTCGCATAAAAAACGTTGACGTTGGCCAGATGCAAATGTTCGAAGATGAACTCAATTTGAGCCTTCTCGATTCTGCGAAACTACTATCGCTTTCATCTAATAGTGTGGGCACTAATCAAAGTTCTGAAAATGGCCTCCTTACCGACTGTAGCTTTGAAGGTTCAGTGATCAATTCGGGTCTTTCGTCAAGTTTTTCTTCGATTGTCGATGAAGTGTTCGAGCTTGAGCGAGGATCATCTGCCCCATCGTTTTCTGTTCAGAGTCTCACTTCGACGTTCAATACTTCCCCTGCTTCACATTTTGGTTCTGCTTCAATGAATGTTCATAATCTAAAAGCTGGAACATTTACAAGTGTGGGCCCTAGTTACGGTGGTTCCATTTATTCGTCAAGCAATTTGAAGGGCTTGATACAGTCCGGTTCTGCTACTTCACTCTCTTCTGGCCATGTAAGGAGCACTAGTGTGAAGAAACTATCAGCTTCGAAATCCGAACAAGATTTAGCCTCTCTTAGGTCCCCTGCCGAAGTTGGTTCTTATACCTCAATGGATGAAGATCAGTTGACTTTATCAGGAAGTCGGTCAACTCGACTACTATCACCCCCACCAACTGGCCCTTGGGTAAGTGCAAAAGCTATCGGGCCCAGAAACTCGTCTACTGGTGCTCTAGCAATTTCTTCTAGAGTTCCTGGATCTAGCACGTGGGTTACTACTCCCGTATCACAAGTACCAGGTTCCTCAATTTTTCCTATGTCAGATCTCGATGCTGTTCCTCCTAAACACGATAAAACATCAAGGAAGCGTACAGTATCAGATATGTTAAATCTAGTCCCTTCACTCCAATCTGTAGAGGTTGGTCCAGGATCTTGCAAGAGAAGAAAAATTGAGGAGTCAGTTATTTCCACTGGAATTATTGGTAAAGCTGAAGGATACAGTTACGCAAATCTGATAGCCGAGGCAAATAAAGGCAATGCACCCTCTAGTGTATACGTTTCGGCTCTTCTTCACGTGGTGAGGCACTGCTCACTTTGTATCAAACATGCCCGACTAACTAGCCAGATGGATGCTCTCGACATACCATATGTTGAAGAAGTGGGTCTAAGAAACGCATCCTCAAACTTATGGTTTCGACTCCCATTCGCCAGAGGCGACACATGGCAATATATATGCTTACGGCTTGGACGACCGGGAAGTATGTATTGGGATGTGAAAATCAACGACCAGCACTTTAGGGACTTGTGGGAGCTTCAAAAGGGAGGCAATAGTACTCCATGGGGTTCTGGTGTTCGAATTGCCAATACATCTGATATAGATTCTCATATTCGTTATGATCCGGAAGGTGTTGTTCTTAGTTATAATTTGGTCGAGGCAGATAGCATTAAGAAGTTAGTTGCTGATATTCAAAGGCTCTCCAATGCTAGAATGTTTGCCCTTGGGATGCGGAGACTGCTTGGTGTAAGGTCAGATGAGAAATCAGAAGAAAATGGAGCAAAAGGCCCCGGTGAGGGAGCTGATAGGCTTACAGAACAGATGAGGAGGGCCTTTAGAATTGAGGCGGTTGGGTTGATGAGTTTATGGTTCAGTTTTGGTTCGGGGGTACTTGCGCGTTTTGTTGTTGAATGGGAATCAGGTAAAGATGGTTGTACAATGCATGTTTCTCCTGACCAGCTTTGGCCTCATACCAAGTTTCTGGAAGATTTCATCAATGGAGCTGAAGTTGCGTCCCTTTTGGATTGTATTCGCCTCACCGCAGGACCATTACATGCTCTTGCAGCTGCAACCCGCCCTGCTCGAGCCGCCCCTGTTTCTGGGGTCCCTGGTGTCACATCTATTTCTTCTATCACCAAGGGTCACTTGCCAACTAGTGCGACCACAGGCACCGCTCAGCCTTCATCGGGCCCTGGACCGAGCCCTGGTTCAACCACCACAACCTCCGCTCACAGCCACCACGGTGCTGCAATGTTGGCTGCTGCCGCTGGTAGAGGTGGGCCTGGCATTGTTCCTAGCTCACTGTTGCCAATTGACGTCTCCGTTGTACTTCGTGGTCCTTACTGGATTCGCATCATTTATAGAAAATATTTTGCAGTTGATATGCGGTGTTTTGCTGGTGATCAGGTTTGGTTGCAACCAGCAACCCCACCCAAGGGGGGCCCTTCAGTTGGAGGGTCTTTACCATGTCCACAGTTTCGTCCCTTCATTATGGAGCACGTTGCTCAGGAATTGAATGGCTTGGACCCTAATTTCACAGGCGGTCAACAGACCGGTGGATTGGCTAATTCAAACAATTCGACTCCTAGTTCGGGTCCAGCTGCAAATGGAAACAGAGTAAATCCTGGTTCTGCCCGTTCGGGAAACCAAGTAGCTGGGATCGGTCGGGTTGGAAATGGTCTTCCAGCGGGGTCAAATTTGGCTGTGGTGAGCTCTGGGTTGCCGTTACGCAGGTCACCTGCCACAGGGGTCCCTGCACATGTGAGAGGAGAATTGAATACGGCCATTATTGGGCTTGGAGATGATGGAGGCTATGGTGGTGGATGGGTTCCTCTTGTTGCTCTAAAGAAGGTTCTTAGAGGTATTCTCAAGTACCTTGGAGTGTTGTGGCTATTTGCGCAGCTACCTGATCTTTTGAAAGAGATTTTGGGCTCAATTCTCAAGGATAACGAAGGTGCACTGTTAAATCTGGACCAGGAACAACCAGCCTTGCGGTTCTTTGTGGGGGGATATGTATTTGCTGTTAGCGTGCACAGGGTCCAACTTCTCCTCCAAGTCCTTAGTGTGAAGCGGTTTCATCATTCACAGCAACAACAACAGCAGCAACAAAACCCATCCATTGCTCAAGAAGAACTAACTCAATCTGAAATAAGTGAAATATGCGACTATTTTAGCCGCCGTGTTGCATCTGAGCCGTACGATGCATCTCGGGTTGCCTCATTCATCACTCTTCTCACTCTACCCATCTCTGTTTTACGAGAATTCTTGAAACTTATAGCATGGAAAAAAGGATTAGCACAAGCACAAGGTGGAGATATAGCCCCAGCCCAAAAATCTCGCATAGAATTATGCCTCGAAAATCACTCGGGATTGAATATGGATGGTTACTCTGAGAATTCGTCTGCCACCAAGAGCAATATCCATTACGACCGCCCTCATAATTCCGTTGACTTTGGGTTGACTGTCGTTCTCGATCCTGCTCACATACCCCACATAAACGCCGCTGGTGGGGCTGCTTGGTTGCCCTATTGTGTTTCCGTGAGGTTGAGATATTCGTTCGGGGAGAATCCGAATGTGGGGTTCCTCGGGATGGAGGGGAGCCACGGTGGGCGGGCGTGCTGGCTAAGGCTCGAGGACTGGGAGAAGTGCAAGCAGAGGGTGGTTCGAACTGTGGAAATGAACTCGTGCTCCACCGGTGATGTTAATCAGGGCCGCCTGAGGATGGTGGCTGATAGTGTGCAAAGAACGCTCCACGTGTGCCTTCAAGGGCTGAGGGAGGGCAGTGGCGCTGTGGCTGTAACTGCTGGAGCTACGTGA

Network for GWHGAAZE003964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08638.12	Med14	8	197	5.90E-51

Protein Sequence

>GWHPAAZE003967
MTELGQQTVEFSTLVSRAAEDSYLSLKELVEKSKSSEMADSEKKISILKYLVKTQQRMLRLNVLAKWCQQVPLIQYCQQLTSTLSSHDTCFTQAADSMFFMHEGLQQARAPIYDVPSSIEVLLTGTYQRLPKCIEDVGIQSTLTKDQQKPALKKLDVLVRSKLLEVSLPKEISEVKVSDGTALLRVDGEFKVLVTLGYRGHMSMWRILHLELLVGERSGPVKLEVTRQHVLGDDLERRMAAAENPFGTLYNVLHELCISLVMDTVIKQVRSLLHGRWKDAIKFELIYHGNMGQGGSGGSMQLTQDGEADSAGVRTPGLKIIYWLDFDKNSGTSDGGLCPFVKIEPGLDLQIKCVHSTFVIDPQTNKEAEFLIDQSCIDVEKLLLRAICCNRYTRLLEIYRELGKNSHICRAPGDVLLHCLADEHDADNKQKENKPNAEGKEVLRVRAYGSSFFTLGINIRNGRFLLLSSKNVISSSALLECEEALNDGNMTAAEVFMRLRSKSILHLFACIGRFLGLQASNLYIILHNMHNELENFFPLQVYENGFSAVKVPKNALNGSNMMLMGFPECGSSYFLLMQLDKDFKPIFKLLETQPDPSEKAQSLGDSNNVIRIKNVDVGQMQMFEDELNLSLLDSAKLLSLSSNSVGTNQSSENGLLTDCSFEGSVINSGLSSSFSSIVDEVFELERGSSAPSFSVQSLTSTFNTSPASHFGSASMNVHNLKAGTFTSVGPSYGGSIYSSSNLKGLIQSGSATSLSSGHVRSTSVKKLSASKSEQDLASLRSPAEVGSYTSMDEDQLTLSGSRSTRLLSPPPTGPWVSAKAIGPRNSSTGALAISSRVPGSSTWVTTPVSQVPGSSIFPMSDLDAVPPKHDKTSRKRTVSDMLNLVPSLQSVEVGPGSCKRRKIEESVISTGIIGKAEGYSYANLIAEANKGNAPSSVYVSALLHVVRHCSLCIKHARLTSQMDALDIPYVEEVGLRNASSNLWFRLPFARGDTWQYICLRLGRPGSMYWDVKINDQHFRDLWELQKGGNSTPWGSGVRIANTSDIDSHIRYDPEGVVLSYNLVEADSIKKLVADIQRLSNARMFALGMRRLLGVRSDEKSEENGAKGPGEGADRLTEQMRRAFRIEAVGLMSLWFSFGSGVLARFVVEWESGKDGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLHALAAATRPARAAPVSGVPGVTSISSITKGHLPTSATTGTAQPSSGPGPSPGSTTTTSAHSHHGAAMLAAAAGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKYFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLDPNFTGGQQTGGLANSNNSTPSSGPAANGNRVNPGSARSGNQVAGIGRVGNGLPAGSNLAVVSSGLPLRRSPATGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHSQQQQQQQQNPSIAQEELTQSEISEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLAQAQGGDIAPAQKSRIELCLENHSGLNMDGYSENSSATKSNIHYDRPHNSVDFGLTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGENPNVGFLGMEGSHGGRACWLRLEDWEKCKQRVVRTVEMNSCSTGDVNQGRLRMVADSVQRTLHVCLQGLREGSGAVAVTAGAT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15156	MED14, RGR1	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006357	biological_process	regulation of transcription by RNA polymerase II
GO:0016592	cellular_component	mediator complex
GO:0003712	molecular_function	transcription coregulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.860
	SRR3591706	second leaf	10.901
	SRR3591707	mature leaf	11.439
	SRR3591708	Shoot apex	13.236
	SRR3591709	Stem	13.934
	SRR3591710	White floral bud	16.792
	SRR3591711	White flower	19.063
	SRR3591712	Green floral bud	13.330
	SRR3591713	Yellow flower	18.457
SRP173429	SRR8316895	Juvenile bud stage	6.010
	SRR8316896	Juvenile bud stage	9.721
	SRR8316897	Juvenile bud stage	3.925
	SRR8316894	Third green stage	4.774
	SRR8316900	Third green stage	9.611
	SRR8316901	Third green stage	9.015
	SRR8316898	Complete white stage	3.310
	SRR8316899	Complete white stage	11.495
	SRR8316903	Complete white stage	9.274
	SRR8316902	Silver flowering stage	5.302
	SRR8316904	Silver flowering stage	9.689
	SRR8316905	Silver flowering stage	4.164
	SRR8316906	Gold flowering stage	14.757
	SRR8316907	Gold flowering stage	13.459
	SRR8316908	Gold flowering stage	13.336
SRP132670	SRR6706286	Control	10.087
	SRR6706287	Light intensity 50%	10.774
	SRR6706288	Light intensity 20%	11.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.432
	CNS0095593	Slightly white alabastrum(diploid) 2	3.915
	CNS0095594	Slightly white alabastrum(diploid) 3	5.320
	CNS0095595	Whole white alabastrum(diploid) 2	5.010
	CNS0095596	Whole white alabastrum(diploid) 3	4.674
	CNS0095597	Whole white alabastrum(diploid) 4	5.221
	CNS0095598	Silvery flower (diploied) 1	8.402
	CNS0095599	Silvery flower (diploied) 2	6.054
	CNS0095600	Silvery flower (diploied) 3	15.818
	CNS0095601	Golden flower (diploid) 1	6.843
	CNS0095602	Golden flower (diploid) 2	20.105
	CNS0095603	Golden flower (diploid) 3	18.731
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.777
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.104
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.978
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.556
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.336
	CNS0095610	Silvery flower (tetraploid) 1	15.617
	CNS0095611	Silvery flower (tetraploid) 2	15.635
	CNS0095612	Silvery flower (tetraploid) 3	13.231
	CNS0095613	Golden flower (tetraploid) 1	8.390
	CNS0095614	Golden flower (tetraploid) 2	14.069
	CNS0095615	Golden flower (tetraploid) 3	25.854
CRA001975	CRR073297	Stem 1	12.109
	CRR073298	Stem 2	10.919
	CRR073299	Stem 3	9.932
	CRR073300	Leaf 1	12.375
	CRR073301	Leaf 2	11.417
	CRR073302	Leaf 3	7.976
	CRR073303	Juvenile bud 1	9.525
	CRR073304	Juvenile bud 2	6.616
	CRR073305	Juvenile bud 3	15.022
	CRR073306	Third green 1	7.009
	CRR073307	Third green 2	6.056
	CRR073308	Third green 3	7.668
	CRR073309	Second white 1	8.051
	CRR073310	Second white 2	8.272
	CRR073311	Second white 3	13.094
	CRR073312	Silver flowering 1	13.436
	CRR073313	Silver flowering 2	14.329
	CRR073314	Silver flowering 3	11.155
	CRR073315	Gold flowering 1	3.487
	CRR073316	Gold flowering 2	8.010
	CRR073317	Gold flowering 3	5.247
	CRR073318	Tawny withering 1	9.432
	CRR073319	Tawny withering 2	9.615
	CRR073320	Tawny withering 3	9.308