Gene detail

Detail information of GWHGAAZE003933

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010097415.1	0	Replication factor C subunit 3 [Morus notabilis]
COG	YP_004383896.1	5E-40	replication factor C small subunit
Swissprot	tr\|Q8VXX4\|RFC3_ARATH	0	Replication factor C subunit 3
trEMBL	tr\|W9R4F7\|W9R4F7_9ROSA	0	Replication factor C subunit 3 {ECO:0000313\|EMBL:EXB68032.1}
TAIR10	AT5G27740.1	2E-157	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107280359	107289310	+
GWHAAZE00000001	mRNA	107280359	107289310	+
GWHAAZE00000001	exon	107280359	107280442	+
GWHAAZE00000001	exon	107280610	107280720	+
GWHAAZE00000001	exon	107280935	107280967	+
GWHAAZE00000001	exon	107282360	107282528	+
GWHAAZE00000001	exon	107283010	107283191	+
GWHAAZE00000001	exon	107287679	107287815	+
GWHAAZE00000001	exon	107287932	107288030	+
GWHAAZE00000001	exon	107288367	107288436	+
GWHAAZE00000001	exon	107288531	107288605	+
GWHAAZE00000001	exon	107289203	107289310	+
GWHAAZE00000001	CDS	107280359	107280442	+
GWHAAZE00000001	CDS	107280610	107280720	+
GWHAAZE00000001	CDS	107280935	107280967	+
GWHAAZE00000001	CDS	107282360	107282528	+
GWHAAZE00000001	CDS	107283010	107283191	+
GWHAAZE00000001	CDS	107287679	107287815	+
GWHAAZE00000001	CDS	107287932	107288030	+
GWHAAZE00000001	CDS	107288367	107288436	+
GWHAAZE00000001	CDS	107288531	107288605	+
GWHAAZE00000001	CDS	107289203	107289310	+

Transcript Sequence
>GWHTAAZE003939 ATGTTGTGGGTAGACAAGTACAGACCGAAAACCCTAGACAAGGTCGTGGTCCACGAAGATGTCGCTCAAAACCTAAAGAAACTGGTGACAGAGCAAGATTGCCCCCATTTGTTATTCTATGGACCGCCCGGTTCCGGCAAGAAAACCCTAATCATGGCCTTACTCAGACAGATGTTCGGTCCCGGTGCAGAGAAGGTGAGGGTGGAGAACAAGACCTGGAAAGTCGATGCTGGAACTAGAACTATCGATATAGAGCTTACAACATTATCCAGCACCAACCATGTGGAGCTGAATCCCAGTGATGCAGGCTTTCAAGACAGATACATTGTTCAGGAGATAATAAAAGAAATGGCGAAGAACAGACCGATTGACCCAAAAGGAAAGAAGGGATTTAAAGTATTAGTGCTCAACGAGGTTGACAAACTTTCAAGAGAAGCCCAGCACTCTCTACGAAGAACAATGGAAAAATACAGTGCATCATGCCGTCTGATTCTATGCTGCAACAGTTCTTCTAAGGTTACTGAAGCAGTTCGTTCTCGTTGTTTGAATGTGCGAATTAGCGCACCAACACAAGAACAGATCGTTAAAGTCTTGGAATTTATTGGCAAGAAGGAGGGGCTGCAAGTTCCGCCTAAATTTGCAGCTCGTGTAGCAGAAAAATCAAATCGGAGTTTAAGAAGGGCTATATTGTCATTTGAGACTTGTCGTGTCCAACAGTACCCTTTTACAGATAATCAAGTAATATCCCCAATGGATTGGGAGGAATATGTATCAGAAATTGCATCAGACATTATGAAGGAGCAGAGTCCGAAGAGGTTGTTCCAGGTTCGGGGAAAGGTTTATGAGTTGCTTGTTAACTGTATTCCTCCTGAAATTGTTTTGAAGAGGCTGCTTTTCGAGTTACTGAAGAAGTTGGACTCCGAATTGAAGCACGAGGTTTGTCATTGGGCTGCATATTATGTTTTGCTAGAGAAGAGGCTATTCATATTCCATGCATCTCACTGGAGACCATTAGCCTATTTCGGGTTTGATATTGATATATGGTTGGAGGGAGGGACGGATAATTAA

Network for GWHGAAZE003933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13177.7	DNA_pol3_delta2	18	188	5.20E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10756	RFC3_5	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.788
	SRR3591706	second leaf	8.127
	SRR3591707	mature leaf	8.144
	SRR3591708	Shoot apex	32.131
	SRR3591709	Stem	15.380
	SRR3591710	White floral bud	6.992
	SRR3591711	White flower	14.176
	SRR3591712	Green floral bud	8.679
	SRR3591713	Yellow flower	13.033
SRP173429	SRR8316895	Juvenile bud stage	12.658
	SRR8316896	Juvenile bud stage	22.354
	SRR8316897	Juvenile bud stage	7.799
	SRR8316894	Third green stage	7.756
	SRR8316900	Third green stage	17.407
	SRR8316901	Third green stage	15.618
	SRR8316898	Complete white stage	6.493
	SRR8316899	Complete white stage	20.586
	SRR8316903	Complete white stage	9.740
	SRR8316902	Silver flowering stage	7.733
	SRR8316904	Silver flowering stage	8.040
	SRR8316905	Silver flowering stage	5.090
	SRR8316906	Gold flowering stage	13.485
	SRR8316907	Gold flowering stage	12.712
	SRR8316908	Gold flowering stage	17.929
SRP132670	SRR6706286	Control	15.274
	SRR6706287	Light intensity 50%	17.628
	SRR6706288	Light intensity 20%	20.111
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.855
	CNS0095593	Slightly white alabastrum(diploid) 2	9.984
	CNS0095594	Slightly white alabastrum(diploid) 3	9.143
	CNS0095595	Whole white alabastrum(diploid) 2	7.369
	CNS0095596	Whole white alabastrum(diploid) 3	8.327
	CNS0095597	Whole white alabastrum(diploid) 4	7.400
	CNS0095598	Silvery flower (diploied) 1	9.554
	CNS0095599	Silvery flower (diploied) 2	10.185
	CNS0095600	Silvery flower (diploied) 3	12.857
	CNS0095601	Golden flower (diploid) 1	6.423
	CNS0095602	Golden flower (diploid) 2	9.881
	CNS0095603	Golden flower (diploid) 3	11.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.001
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.747
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.551
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.231
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.430
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.610
	CNS0095610	Silvery flower (tetraploid) 1	16.911
	CNS0095611	Silvery flower (tetraploid) 2	18.250
	CNS0095612	Silvery flower (tetraploid) 3	13.117
	CNS0095613	Golden flower (tetraploid) 1	9.721
	CNS0095614	Golden flower (tetraploid) 2	14.486
	CNS0095615	Golden flower (tetraploid) 3	10.241
CRA001975	CRR073297	Stem 1	18.464
	CRR073298	Stem 2	20.453
	CRR073299	Stem 3	18.235
	CRR073300	Leaf 1	13.740
	CRR073301	Leaf 2	10.183
	CRR073302	Leaf 3	9.511
	CRR073303	Juvenile bud 1	12.953
	CRR073304	Juvenile bud 2	10.924
	CRR073305	Juvenile bud 3	13.210
	CRR073306	Third green 1	2.452
	CRR073307	Third green 2	5.161
	CRR073308	Third green 3	4.326
	CRR073309	Second white 1	7.124
	CRR073310	Second white 2	6.508
	CRR073311	Second white 3	6.471
	CRR073312	Silver flowering 1	4.874
	CRR073313	Silver flowering 2	6.684
	CRR073314	Silver flowering 3	4.935
	CRR073315	Gold flowering 1	7.487
	CRR073316	Gold flowering 2	10.467
	CRR073317	Gold flowering 3	7.745
	CRR073318	Tawny withering 1	14.020
	CRR073319	Tawny withering 2	13.234
	CRR073320	Tawny withering 3	19.704