Detail information of GWHGAAZE003930


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAC50039.11.19741E-06polynucleotide phosphorylase [Pisum sativum]
Swissprottr|Q69LE7|PNP1_ORYSJ0.0000002Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic (Precursor)
trEMBLtr|O24288|O24288_PEA0.0000004Polynucleotide phosphorylase {ECO:0000313|EMBL:AAC50039.1}
TAIR10AT3G03710.10.00001polyribonucleotide nucleotidyltransferase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene107251563107252196+
GWHAAZE00000001mRNA107251563107252196+
GWHAAZE00000001exon107251563107251670+
GWHAAZE00000001exon107252116107252196+
GWHAAZE00000001CDS107251563107251670+
GWHAAZE00000001CDS107252116107252196+
Transcript Sequence

Network for GWHGAAZE003930

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00962pnp, PNPT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.861
SRR3591706second leaf7.813
SRR3591707mature leaf6.504
SRR3591708Shoot apex9.310
SRR3591709Stem2.766
SRR3591710White floral bud2.676
SRR3591711White flower5.555
SRR3591712Green floral bud4.341
SRR3591713Yellow flower3.735
SRP173429 SRR8316895Juvenile bud stage 3.502
SRR8316896Juvenile bud stage 3.948
SRR8316897Juvenile bud stage 1.513
SRR8316894Third green stage 1.539
SRR8316900Third green stage 4.601
SRR8316901Third green stage 2.983
SRR8316898Complete white stage 1.511
SRR8316899Complete white stage 2.412
SRR8316903Complete white stage 1.560
SRR8316902Silver flowering stage0.745
SRR8316904Silver flowering stage1.218
SRR8316905Silver flowering stage0.958
SRR8316906Gold flowering stage 2.243
SRR8316907Gold flowering stage 1.029
SRR8316908Gold flowering stage 3.200
SRP132670SRR6706286Control0.955
SRR6706287Light intensity 50%1.491
SRR6706288Light intensity 20%1.457
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.221
CNS0095593Slightly white alabastrum(diploid) 21.699
CNS0095594Slightly white alabastrum(diploid) 31.833
CNS0095595Whole white alabastrum(diploid) 21.901
CNS0095596Whole white alabastrum(diploid) 30.507
CNS0095597Whole white alabastrum(diploid) 41.199
CNS0095598Silvery flower (diploied) 13.362
CNS0095599Silvery flower (diploied) 22.608
CNS0095600Silvery flower (diploied) 32.222
CNS0095601Golden flower (diploid) 12.875
CNS0095602Golden flower (diploid) 23.999
CNS0095603Golden flower (diploid) 33.698
CNS0095604Slightly white alabastrum(tetraploid) 13.212
CNS0095605Slightly white alabastrum(tetraploid) 22.758
CNS0095606Slightly white alabastrum(tetraploid) 37.708
CNS0095607Whole white alabastrum(tetraploid) 11.443
CNS0095608Whole white alabastrum(tetraploid) 20.510
CNS0095609Whole white alabastrum(tetraploid) 33.618
CNS0095610Silvery flower (tetraploid) 15.619
CNS0095611Silvery flower (tetraploid) 24.035
CNS0095612Silvery flower (tetraploid) 33.600
CNS0095613Golden flower (tetraploid) 12.036
CNS0095614Golden flower (tetraploid) 23.995
CNS0095615Golden flower (tetraploid) 33.084
CRA001975CRR073297Stem 13.366
CRR073298Stem 25.449
CRR073299Stem 31.399
CRR073300Leaf 13.049
CRR073301Leaf 23.111
CRR073302Leaf 31.465
CRR073303Juvenile bud 11.235
CRR073304Juvenile bud 20.678
CRR073305Juvenile bud 32.873
CRR073306Third green 10.389
CRR073307Third green 20.000
CRR073308Third green 30.415
CRR073309Second white 12.323
CRR073310Second white 20.966
CRR073311Second white 30.424
CRR073312Silver flowering 10.878
CRR073313Silver flowering 22.109
CRR073314Silver flowering 31.009
CRR073315Gold flowering 12.879
CRR073316Gold flowering 26.518
CRR073317Gold flowering 33.064
CRR073318Tawny withering 11.567
CRR073319Tawny withering 21.974
CRR073320Tawny withering 31.416