Gene detail

Detail information of GWHGAAZE003867

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008387148.1	0	PREDICTED: calcium-dependent protein kinase 20-like [Malus domestica]
COG	YP_642814.1	3E-27	serine/threonine protein kinase
Swissprot	tr\|Q9ZV15\|CDPKK_ARATH	0	Calcium-dependent protein kinase 20
trEMBL	tr\|F6I3P3\|F6I3P3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61553.1}
TAIR10	AT2G38910.1	0	calcium-dependent protein kinase 20

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106117893	106136953	-
GWHAAZE00000001	mRNA	106117893	106136953	-
GWHAAZE00000001	exon	106117893	106118291	-
GWHAAZE00000001	exon	106118823	106119047	-
GWHAAZE00000001	exon	106126679	106126846	-
GWHAAZE00000001	exon	106127986	106128101	-
GWHAAZE00000001	exon	106134228	106134380	-
GWHAAZE00000001	exon	106134487	106134630	-
GWHAAZE00000001	exon	106135448	106135492	-
GWHAAZE00000001	exon	106136128	106136953	-
GWHAAZE00000001	CDS	106136128	106136953	-
GWHAAZE00000001	CDS	106135448	106135492	-
GWHAAZE00000001	CDS	106134487	106134630	-
GWHAAZE00000001	CDS	106134228	106134380	-
GWHAAZE00000001	CDS	106127986	106128101	-
GWHAAZE00000001	CDS	106126679	106126846	-
GWHAAZE00000001	CDS	106118823	106119047	-
GWHAAZE00000001	CDS	106118172	106118291	-
GWHAAZE00000001	three_prime_UTR	106117893	106118171	-

Transcript Sequence
>GWHTAAZE003873 ATGGGGAACACATGTGTAGGTCCCAATTTGGGAGAAAAGGGGATCTTACAATCTGTAACAGCTGCTGTTTGGCGAACAAGGCCACCCGAAAACACTCTCCCTGCCCCTAACAGCGAAGGCAGCACCAACAACACTAACAATTCCAGTTCCAATGCAAATTCAAATTCTGCAAATCCTAAGGGACCTGAAACTAAAGGTTCAGATCCAAAAACACCGCCGGCAGCTGTGAAGATAACAGGAGAGAAGACAGAGGTGAAGGACAAGGGCCCGGGTCCCGGGGGACATATGAAGCGAATGGCAAGTGTGGGACTTAAAGTTGAGTCAGTGTTGCAAAGCAAAACTGGGAATATGAAGGAGGTTTATAGTTTAGGGAAGAAGTTAGGGCAAGGGCAATTCGGGACGACCTTTCTTTGCGTGGAGAAGGCCACCGGGAAAGAGTTTGCGTGCAAATCGATTGCCAAGAGGAAGTTGCTGACGGCGGAAGATGTGGAGGATGTTAGGAGGGAGATTCAGATACTGCATCATATGGCGGGTCACCCGAATGTTATATCGATTGTGGGTGCTTATGAGGATGCTGTTGCGGTTTATGTTATTATGGAGCTTTGTGCAGGAGGGGAGCTTTTTGATAGGATTATACAGAGAGGGCATTATACAGAGAGAAAGGCTGCTGAGCTTGCTAGGATAATAGTTGGTGTCGTGGAATCGTGCCATTCGTTAGGGGTTATGCATAGGGATTTGAAGCCTGAGAATTTTCTCTTCGTTAATGGGGAAGAGGAAGCACCCCTTAAAACAATAGACTTTGGTCTCTCGGTGTTCTTTAGACCAGGTGGTGGGTTGGTCAATGGTCGAGATGTATGGTCTTTTATTATTTGTGAAATATTTACTGACGTGGTTGGAAGTCCTTACTATGTTGCCCCGGAGGTATTGCGAAAACAATACGGTCAAGAATGTGATGTTTGGAGTGCAGGGGTTATCATTTATATTTTGCTCAGTGGGGTCCCTCCGTTTTGGGATGAAACGGAACAAGGAATATTCGAGCAGGTATTAAAAGGTGAACTCGACTTTGTATCAGAACCGTGGCCTAGTATATCTGATAGTGCAAAGGATCTGGTTAGGAAAATGCTTGTAAGAGACCGAAAATTGCGGCTCACAGCCCATGAAGTCCTTTGCCACCCCTGGGTTCGTGTTGGTGGTGAAGCTCCTGATAAACCACTGGATAATGCTGTTCTAACTCGTTTGAAGCAATTCTCTGCCATGAACAAATTAAAGAAGATAGCCATCAGAGTTATTGCTGAGAGTCTATCTGAAGAGGAAATAGCAGGACTGAAAGAAATGTTTAAGATGATGGATGCAGATAATAGTGGACATATAACAGTTGAAGAGCTAAAGAATGGTTTGGAAAAAGTGGGGGCAAATCTTAAGGATTCAGAAATTAATGGCTTAATGCAAGCAGCGGATTTGGACAACAGCGGGTCTATAGACTACAGCGAGTTTGTAGCAGCAATGCTCCATCTAAACAAAGCCCAGAGGGAAGATCATATGTATGCAGCTTTCTCATACTTCGATAAAGATGGGAGTGGATACATCACAGCTGATGAGCTACAACAGGCTTGTGAGAAGTTTGGTTTGGGAGACGTACACCTAGATGAAATTATGCGCGAAGTTGATCAGGATAATGACGGGCGCATTGATTACAGCGAATTTGTGGCTATGATGCAAGACACTGGTTTTGGAACAAAGGGGTCTCAAAACCGCATAAGCATTGGGTTCAGAGATGTTAAGCTTGGTAATACTTGACTCTTTCTCGGTAGCCATCTAAACAACATCTAATTTTTTTTTCCTCATTTACAATTCAAGAAAAAAAAAAGGAGATGGGGAATGCGTATTGTTGTAAAGGTCAGCCAGGCTTTGTTGTTTTGCGTTTTAGTGGTTTCTGTTTAGTTGTTAGGTAATTTCTTGTCCTGGACAAAGAATGTCAACAACAAGGATTCTCCTCTTTCTTGTAGCTTATGTATGTAGTTCTCTATTTTTGTCACCTCTTTCCAGTATGATAAATGAAATGCTCTTTTTACAAAA

Network for GWHGAAZE003867

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	121	394	4.00E-69
PF13499.7	EF-hand_7	442	502	1.40E-12
PF13499.7	EF-hand_7	512	573	2.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.679
	SRR3591706	second leaf	0.193
	SRR3591707	mature leaf	0.016
	SRR3591708	Shoot apex	0.684
	SRR3591709	Stem	0.116
	SRR3591710	White floral bud	3.947
	SRR3591711	White flower	0.941
	SRR3591712	Green floral bud	8.698
	SRR3591713	Yellow flower	0.386
SRP173429	SRR8316895	Juvenile bud stage	6.346
	SRR8316896	Juvenile bud stage	12.965
	SRR8316897	Juvenile bud stage	4.734
	SRR8316894	Third green stage	3.622
	SRR8316900	Third green stage	10.627
	SRR8316901	Third green stage	13.243
	SRR8316898	Complete white stage	0.307
	SRR8316899	Complete white stage	3.037
	SRR8316903	Complete white stage	0.875
	SRR8316902	Silver flowering stage	0.894
	SRR8316904	Silver flowering stage	0.806
	SRR8316905	Silver flowering stage	0.454
	SRR8316906	Gold flowering stage	1.389
	SRR8316907	Gold flowering stage	1.341
	SRR8316908	Gold flowering stage	0.350
SRP132670	SRR6706286	Control	6.055
	SRR6706287	Light intensity 50%	5.351
	SRR6706288	Light intensity 20%	4.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.636
	CNS0095593	Slightly white alabastrum(diploid) 2	9.973
	CNS0095594	Slightly white alabastrum(diploid) 3	19.082
	CNS0095595	Whole white alabastrum(diploid) 2	14.812
	CNS0095596	Whole white alabastrum(diploid) 3	18.107
	CNS0095597	Whole white alabastrum(diploid) 4	13.123
	CNS0095598	Silvery flower (diploied) 1	1.937
	CNS0095599	Silvery flower (diploied) 2	2.337
	CNS0095600	Silvery flower (diploied) 3	1.708
	CNS0095601	Golden flower (diploid) 1	1.681
	CNS0095602	Golden flower (diploid) 2	1.902
	CNS0095603	Golden flower (diploid) 3	1.579
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.922
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.960
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.168
	CNS0095610	Silvery flower (tetraploid) 1	0.361
	CNS0095611	Silvery flower (tetraploid) 2	0.470
	CNS0095612	Silvery flower (tetraploid) 3	0.817
	CNS0095613	Golden flower (tetraploid) 1	0.552
	CNS0095614	Golden flower (tetraploid) 2	0.446
	CNS0095615	Golden flower (tetraploid) 3	0.584
CRA001975	CRR073297	Stem 1	5.598
	CRR073298	Stem 2	6.102
	CRR073299	Stem 3	3.412
	CRR073300	Leaf 1	5.918
	CRR073301	Leaf 2	6.083
	CRR073302	Leaf 3	2.396
	CRR073303	Juvenile bud 1	4.046
	CRR073304	Juvenile bud 2	2.018
	CRR073305	Juvenile bud 3	1.165
	CRR073306	Third green 1	0.683
	CRR073307	Third green 2	0.909
	CRR073308	Third green 3	1.086
	CRR073309	Second white 1	0.837
	CRR073310	Second white 2	0.387
	CRR073311	Second white 3	0.463
	CRR073312	Silver flowering 1	0.979
	CRR073313	Silver flowering 2	0.776
	CRR073314	Silver flowering 3	0.758
	CRR073315	Gold flowering 1	0.456
	CRR073316	Gold flowering 2	2.068
	CRR073317	Gold flowering 3	0.863
	CRR073318	Tawny withering 1	0.899
	CRR073319	Tawny withering 2	0.761
	CRR073320	Tawny withering 3	1.042