Gene detail

Detail information of GWHGAAZE003858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU38709.1	0	hypothetical protein MIMGU_mgv1a002855mg [Erythranthe guttata]
COG	YP_289403.1	1E-25	tyrosine protein kinase:Serine/threonine protein kinase
Swissprot	tr\|Q38870\|CDPK2_ARATH	0	Calcium-dependent protein kinase 2
trEMBL	tr\|A0A022RFA5\|A0A022RFA5_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU38709.1}
TAIR10	AT3G10660.1	0	calmodulin-domain protein kinase cdpk isoform 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	105878055	105885449	-
GWHAAZE00000001	mRNA	105878055	105885449	-
GWHAAZE00000001	exon	105884525	105885449	-
GWHAAZE00000001	exon	105882066	105882209	-
GWHAAZE00000001	exon	105881783	105881935	-
GWHAAZE00000001	exon	105881076	105881191	-
GWHAAZE00000001	exon	105880462	105880629	-
GWHAAZE00000001	exon	105879446	105879670	-
GWHAAZE00000001	exon	105878055	105878244	-
GWHAAZE00000001	CDS	105884525	105885449	-
GWHAAZE00000001	CDS	105882066	105882209	-
GWHAAZE00000001	CDS	105881783	105881935	-
GWHAAZE00000001	CDS	105881076	105881191	-
GWHAAZE00000001	CDS	105880462	105880629	-
GWHAAZE00000001	CDS	105879446	105879670	-
GWHAAZE00000001	CDS	105878122	105878244	-
GWHAAZE00000001	three_prime_UTR	105878055	105878121	-

Transcript Sequence
>GWHTAAZE003864 ATGGGAAATTATTGTGTTGGAGTAAGGGCCGCAAAGGATGGATTCTTTCACTCAATTTCACATACGTTGTGGTGGTCTCGATCGCATAATAACGCCATCGCCTATAAGAAGAAAGATAGTGATAGCAAAACTAAAGCGATCCAGGCTCCTAGACCTGTTGTTGTTCAAAATAACCCCCCAGAAGTGGTGAAGATAGTTAGGGAAGAAGAGAATGCTAAACCACCAGAACAGCTTGAAAATGCTTTACATGTCAAGCAGTCGAATGTAGTGAAGGAAAAAGAGACAAAAATAGCAAGCGAATCCGAAAAAGTGGTTAAGGAAAATGAAGAGACGAATAATCCACCAGATACTAAAGGAGGACCACCGCCTAAGAAGCCACATAACGTCAAGAGAATGTCGAGTGCAGGTCTGACGGCCGAATCTGTTTTAAGAACAAAAAATGGTCATTTAAAGGAGCACTATAATTTGGGGCAGAAACTAGGACACGGGCAATTCGGGACTACTTTCCGTTGCGTGGAAAAAGCCACCGGGAAAGAGTATGCTTGCAAATCCATTGCGAAGAGGAAACTGATAACCGATGAAGATGTGGAGGATGTGAGGAGGGAGATTGAGATCCTGCATCACTTATCAGGAGAACCAAATGTTGTCGCCATCAAAGGAGCTTATGAGGATGCTGTTGCAGTTCATGTTGTGATGGAATTGTGTGTAGGGGGTGAGCTCTTTGATAGGATTACAAAACGGGGGCATTATACAGAAAGAAAGGCAGCTAATTTGGCAAAGACGATACTAAATGTCATAGATGCTTGTCATTCAATGGGAGTTATGCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTCAATGGGAGGGAGGAATCGCCTCTTAAGACTATCGACTTTGGACTATCAGTATTCTTCAAACCAGGGGAAACCTTCCATGATGTCGTTGGAAGCCCTTATTATGTTGCACCCGAAGTTTTGCTAAAAAATTATGGTTTAGAAGCTGATATATGGAGTGCCGGTGTGATCGTTTACATTCTTCTAAGTGGTGTTCCTCCATTTTGGGCTGAAAGTGAACAGGATATATTCGAAGAGGTTTTGCGTGGTACTCTTGACTTCTCGTCCGATCCATGGCCGACTATCTCCGACAGTGCCAAGGATTTAGTTAAGAAAATGCTTACCAGAAATCCCAAAAAGCGGATTACTGTTCACGAAGCTCTGTGCCACCCTTGGATTTGTGTTGACGGTGTGGCACCCGACAAACCTCTTGATCCTGCAGTCTTAACTCGCTTGACTCGGTTCTCGGCCATGAACAAGCTTAAGAAAATGGCTCTTAGAGTCATTGCGGAGAAGCTCTCAGAAGAAGAAATAGCTGGCTTAAAAGAAATGTTTAAAATGATAGATGAAGACAACAGTGGCCAAATTACCTTTGAAGAACTCAAGATTGGACTGAAACGATATGGTGCTAACCTTAATGAGTCTGAGATTCATGATCTCATGCAGGCTGCGGATGTTGATAACAGTGGGACGATTGATTATGGGGAGTTCATAGCTGCAACTTTGCACCTTAACAAAATAGAGAGGGAAGACCATCTATTTGCAGCTTTTTCGTATTTTGACAAAGACGGCAGTGGTTATATCACCCAAGATGAGCTTCAACAAGCTTGCCATGAGTTTGGCATAGAGGATGTCCATTTGGAAGAAATGATCCAAGAAATTGATCAGAATAATGACGGACGCATAGATTACAATGAGTTTGTGGCCATGATGCAGAAGGAAAATACAGATTTGGGAAAGAAGCGGTTGCAGAATAGCATTAGTGTCAGATTTAGGGAGGCCCTGCCAGTTTGTTGACATAGCGATGAAATTTACTTTCATTCATTTTTCCGTTACCTCTTGTGATTTTGATTTTGCATATGTG

Network for GWHGAAZE003858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	154	412	2.10E-73
PF13499.7	EF-hand_7	460	520	5.00E-10
PF13499.7	EF-hand_7	530	591	2.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.410
	SRR3591706	second leaf	0.380
	SRR3591707	mature leaf	0.466
	SRR3591708	Shoot apex	0.496
	SRR3591709	Stem	0.805
	SRR3591710	White floral bud	11.592
	SRR3591711	White flower	2.930
	SRR3591712	Green floral bud	10.355
	SRR3591713	Yellow flower	4.866
SRP173429	SRR8316895	Juvenile bud stage	2.793
	SRR8316896	Juvenile bud stage	4.181
	SRR8316897	Juvenile bud stage	1.609
	SRR8316894	Third green stage	0.998
	SRR8316900	Third green stage	5.778
	SRR8316901	Third green stage	5.672
	SRR8316898	Complete white stage	0.576
	SRR8316899	Complete white stage	2.138
	SRR8316903	Complete white stage	1.920
	SRR8316902	Silver flowering stage	0.727
	SRR8316904	Silver flowering stage	1.148
	SRR8316905	Silver flowering stage	0.831
	SRR8316906	Gold flowering stage	1.315
	SRR8316907	Gold flowering stage	1.187
	SRR8316908	Gold flowering stage	1.595
SRP132670	SRR6706286	Control	5.268
	SRR6706287	Light intensity 50%	4.877
	SRR6706288	Light intensity 20%	4.486
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.846
	CNS0095593	Slightly white alabastrum(diploid) 2	3.286
	CNS0095594	Slightly white alabastrum(diploid) 3	4.847
	CNS0095595	Whole white alabastrum(diploid) 2	13.283
	CNS0095596	Whole white alabastrum(diploid) 3	15.346
	CNS0095597	Whole white alabastrum(diploid) 4	21.771
	CNS0095598	Silvery flower (diploied) 1	1.714
	CNS0095599	Silvery flower (diploied) 2	2.488
	CNS0095600	Silvery flower (diploied) 3	2.829
	CNS0095601	Golden flower (diploid) 1	1.319
	CNS0095602	Golden flower (diploid) 2	1.656
	CNS0095603	Golden flower (diploid) 3	2.367
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.977
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.042
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.412
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.648
	CNS0095610	Silvery flower (tetraploid) 1	3.474
	CNS0095611	Silvery flower (tetraploid) 2	3.657
	CNS0095612	Silvery flower (tetraploid) 3	4.269
	CNS0095613	Golden flower (tetraploid) 1	1.705
	CNS0095614	Golden flower (tetraploid) 2	2.039
	CNS0095615	Golden flower (tetraploid) 3	8.268
CRA001975	CRR073297	Stem 1	2.018
	CRR073298	Stem 2	2.397
	CRR073299	Stem 3	1.622
	CRR073300	Leaf 1	6.869
	CRR073301	Leaf 2	4.648
	CRR073302	Leaf 3	1.950
	CRR073303	Juvenile bud 1	6.426
	CRR073304	Juvenile bud 2	4.733
	CRR073305	Juvenile bud 3	1.700
	CRR073306	Third green 1	2.194
	CRR073307	Third green 2	1.856
	CRR073308	Third green 3	1.633
	CRR073309	Second white 1	0.587
	CRR073310	Second white 2	0.316
	CRR073311	Second white 3	1.804
	CRR073312	Silver flowering 1	1.394
	CRR073313	Silver flowering 2	1.458
	CRR073314	Silver flowering 3	2.132
	CRR073315	Gold flowering 1	1.124
	CRR073316	Gold flowering 2	1.366
	CRR073317	Gold flowering 3	0.722
	CRR073318	Tawny withering 1	2.474
	CRR073319	Tawny withering 2	3.628
	CRR073320	Tawny withering 3	1.376