Detail information of GWHGAAZE003838


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010247323.14.11133E-51PREDICTED: ATP-dependent RNA helicase DHX36 isoform X3 [Nelumbo nucifera]
trEMBLtr|F6I3K9|F6I3K9_VITVI3E-50Putative uncharacterized protein {ECO:0000313|EMBL:CCB61573.1}
TAIR10AT2G35920.13E-32RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene105524233105525459-
GWHAAZE00000001mRNA105524233105525459-
GWHAAZE00000001exon105524233105524244-
GWHAAZE00000001exon105524402105524497-
GWHAAZE00000001exon105525039105525254-
GWHAAZE00000001exon105525334105525459-
GWHAAZE00000001CDS105525334105525459-
GWHAAZE00000001CDS105525039105525254-
GWHAAZE00000001CDS105524402105524497-
GWHAAZE00000001CDS105524233105524244-
Transcript Sequence

Network for GWHGAAZE003838

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14442DHX36, RHAU RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.034
SRR3591706second leaf9.864
SRR3591707mature leaf10.825
SRR3591708Shoot apex12.122
SRR3591709Stem10.779
SRR3591710White floral bud7.937
SRR3591711White flower11.124
SRR3591712Green floral bud9.356
SRR3591713Yellow flower8.620
SRP173429 SRR8316895Juvenile bud stage 8.516
SRR8316896Juvenile bud stage 13.023
SRR8316897Juvenile bud stage 6.062
SRR8316894Third green stage 4.898
SRR8316900Third green stage 12.271
SRR8316901Third green stage 11.851
SRR8316898Complete white stage 1.982
SRR8316899Complete white stage 14.199
SRR8316903Complete white stage 5.276
SRR8316902Silver flowering stage4.297
SRR8316904Silver flowering stage3.751
SRR8316905Silver flowering stage2.691
SRR8316906Gold flowering stage 7.934
SRR8316907Gold flowering stage 6.791
SRR8316908Gold flowering stage 6.851
SRP132670SRR6706286Control4.027
SRR6706287Light intensity 50%6.009
SRR6706288Light intensity 20%5.962
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.653
CNS0095593Slightly white alabastrum(diploid) 23.058
CNS0095594Slightly white alabastrum(diploid) 34.377
CNS0095595Whole white alabastrum(diploid) 25.234
CNS0095596Whole white alabastrum(diploid) 32.583
CNS0095597Whole white alabastrum(diploid) 43.518
CNS0095598Silvery flower (diploied) 16.040
CNS0095599Silvery flower (diploied) 25.458
CNS0095600Silvery flower (diploied) 311.242
CNS0095601Golden flower (diploid) 15.634
CNS0095602Golden flower (diploid) 211.209
CNS0095603Golden flower (diploid) 312.919
CNS0095604Slightly white alabastrum(tetraploid) 17.882
CNS0095605Slightly white alabastrum(tetraploid) 26.686
CNS0095606Slightly white alabastrum(tetraploid) 317.602
CNS0095607Whole white alabastrum(tetraploid) 15.354
CNS0095608Whole white alabastrum(tetraploid) 24.744
CNS0095609Whole white alabastrum(tetraploid) 313.823
CNS0095610Silvery flower (tetraploid) 114.497
CNS0095611Silvery flower (tetraploid) 29.549
CNS0095612Silvery flower (tetraploid) 37.958
CNS0095613Golden flower (tetraploid) 12.845
CNS0095614Golden flower (tetraploid) 29.404
CNS0095615Golden flower (tetraploid) 36.701
CRA001975CRR073297Stem 16.315
CRR073298Stem 29.166
CRR073299Stem 39.052
CRR073300Leaf 18.935
CRR073301Leaf 28.033
CRR073302Leaf 36.685
CRR073303Juvenile bud 15.846
CRR073304Juvenile bud 23.355
CRR073305Juvenile bud 37.887
CRR073306Third green 10.873
CRR073307Third green 20.000
CRR073308Third green 32.066
CRR073309Second white 12.052
CRR073310Second white 22.216
CRR073311Second white 31.193
CRR073312Silver flowering 12.833
CRR073313Silver flowering 22.027
CRR073314Silver flowering 32.909
CRR073315Gold flowering 11.141
CRR073316Gold flowering 28.388
CRR073317Gold flowering 37.900
CRR073318Tawny withering 16.477
CRR073319Tawny withering 22.045
CRR073320Tawny withering 34.856