Detail information of GWHGAAZE003830


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10596.12.8956E-175unnamed protein product [Coffea canephora]
Swissprottr|Q9SJ56|BLH1_ARATH1E-131BEL1-like homeodomain protein 1
trEMBLtr|A0A068UQ86|A0A068UQ86_COFCA1E-175Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313|EMBL:CDP10596.1}
TAIR10AT2G35940.33E-102BEL1-like homeodomain 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene105454670105458408+
GWHAAZE00000001mRNA105454670105458408+
GWHAAZE00000001exon105454670105455455+
GWHAAZE00000001exon105456802105457181+
GWHAAZE00000001exon105457266105457326+
GWHAAZE00000001exon105457622105457680+
GWHAAZE00000001exon105457971105458051+
GWHAAZE00000001exon105458129105458408+
GWHAAZE00000001CDS105454670105455455+
GWHAAZE00000001CDS105456802105457181+
GWHAAZE00000001CDS105457266105457326+
GWHAAZE00000001CDS105457622105457680+
GWHAAZE00000001CDS105457971105458051+
GWHAAZE00000001CDS105458129105458408+
Transcript Sequence

Network for GWHGAAZE003830

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07526.12POX1793121.10E-47
PF05920.12Homeobox_KN3814201.10E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-BELL

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf97.743
SRR3591706second leaf10.309
SRR3591707mature leaf15.276
SRR3591708Shoot apex28.788
SRR3591709Stem107.952
SRR3591710White floral bud146.135
SRR3591711White flower322.243
SRR3591712Green floral bud63.198
SRR3591713Yellow flower230.723
SRP173429 SRR8316895Juvenile bud stage 39.690
SRR8316896Juvenile bud stage 55.046
SRR8316897Juvenile bud stage 25.347
SRR8316894Third green stage 15.425
SRR8316900Third green stage 41.040
SRR8316901Third green stage 49.215
SRR8316898Complete white stage 61.605
SRR8316899Complete white stage 130.325
SRR8316903Complete white stage 102.199
SRR8316902Silver flowering stage83.498
SRR8316904Silver flowering stage114.599
SRR8316905Silver flowering stage62.517
SRR8316906Gold flowering stage 195.754
SRR8316907Gold flowering stage 148.631
SRR8316908Gold flowering stage 165.294
SRP132670SRR6706286Control62.878
SRR6706287Light intensity 50%57.778
SRR6706288Light intensity 20%54.431
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.666
CNS0095593Slightly white alabastrum(diploid) 248.082
CNS0095594Slightly white alabastrum(diploid) 333.821
CNS0095595Whole white alabastrum(diploid) 234.684
CNS0095596Whole white alabastrum(diploid) 318.105
CNS0095597Whole white alabastrum(diploid) 439.543
CNS0095598Silvery flower (diploied) 1129.309
CNS0095599Silvery flower (diploied) 2117.002
CNS0095600Silvery flower (diploied) 3250.951
CNS0095601Golden flower (diploid) 1107.341
CNS0095602Golden flower (diploid) 2218.783
CNS0095603Golden flower (diploid) 3215.292
CNS0095604Slightly white alabastrum(tetraploid) 126.218
CNS0095605Slightly white alabastrum(tetraploid) 217.959
CNS0095606Slightly white alabastrum(tetraploid) 352.456
CNS0095607Whole white alabastrum(tetraploid) 121.792
CNS0095608Whole white alabastrum(tetraploid) 216.560
CNS0095609Whole white alabastrum(tetraploid) 342.046
CNS0095610Silvery flower (tetraploid) 1223.133
CNS0095611Silvery flower (tetraploid) 2244.886
CNS0095612Silvery flower (tetraploid) 3214.042
CNS0095613Golden flower (tetraploid) 1140.167
CNS0095614Golden flower (tetraploid) 2173.863
CNS0095615Golden flower (tetraploid) 3278.325
CRA001975CRR073297Stem 181.606
CRR073298Stem 278.789
CRR073299Stem 367.986
CRR073300Leaf 1114.686
CRR073301Leaf 2119.679
CRR073302Leaf 373.555
CRR073303Juvenile bud 198.929
CRR073304Juvenile bud 294.591
CRR073305Juvenile bud 3154.688
CRR073306Third green 1137.549
CRR073307Third green 2110.813
CRR073308Third green 3132.129
CRR073309Second white 1100.047
CRR073310Second white 2121.562
CRR073311Second white 3122.389
CRR073312Silver flowering 1124.017
CRR073313Silver flowering 2143.627
CRR073314Silver flowering 3122.024
CRR073315Gold flowering 127.042
CRR073316Gold flowering 238.301
CRR073317Gold flowering 320.688
CRR073318Tawny withering 1111.664
CRR073319Tawny withering 297.374
CRR073320Tawny withering 383.986