Gene detail

Detail information of GWHGAAZE003825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274910.2	0	PREDICTED: probable receptor protein kinase TMK1 [Vitis vinifera]
COG	YP_004775215.1	8E-26	RHS repeat-associated core domain-containing protein
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|F6HKS3\|F6HKS3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55493.1}
TAIR10	AT2G01820.1	7E-143	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	105232862	105236423	-
GWHAAZE00000001	mRNA	105232862	105236423	-
GWHAAZE00000001	exon	105232862	105233370	-
GWHAAZE00000001	exon	105234062	105236423	-
GWHAAZE00000001	CDS	105234062	105236423	-
GWHAAZE00000001	CDS	105232862	105233370	-

Transcript Sequence
>GWHTAAZE003831 ATGGAAACTAAACAGACAAAGCTTCTCATTATAGTATCACTCTTTCTCTCTCTTGTTTCACTTGTTGCTAGTGTTACAGACCCTAATGACCTTGCAATTCTCAACAATCTAAGAAAAGGGTTAGTGAATTCAGACCTCTTAAAATGGCCTGAAAATGGGGATAATGACCCTTGTGGTCCACCAAGTTGGCCTCACATAGTGTGCGTTGGTAATAGGGTTTCTCAAATTCAAGTTCAAGGTATGAACTTGAAGGGTCCTTTACCCCAAAACTTTAACCAGTTGTCTATGCTAACAAATCTTGGCCTACAAAAGAATCAATTCTCTGGGGTTTTACCTTCCTTTAGTGGGTTATCTAAATTGAGATACGCTTATTTGGATTACAATAATTTTGATACAATTCCCTTAGATTTCTTCAATGGCCTTGATAGTTTAGAGGTTATGGCTTTAGATGATAACCCACTTAATGCGACAGCCGGTTGGTCACTTCCGGTGGACCTGCAGGGTTCAGTTCAATTGACCAATCTGTCTTTGATGACTTGTAATCTTGCCGGTGAGTTGCCGGATTATTTGGGCAAGATGGCCTCATTGGGGGTGTTGAAATTGTCCTTTAACCAAATCTCTGGTGGTATTCCGGCGAGTTTTGGGGATTCTGGGTTGAGGATTCTTTGGTTAAATGATCAGTCCGGCGGGGGAATGACCGGTCCGATCGATGTGGTTGGTTCAATGGGTTCACTCACTAGTTTGTGGCTTCATGGGAACCATTTCTCGGGTAAAATTCCGGTGAGTATCGGTAATTTGAGTTCATTGCAGAGCTTGAATCTTAATTCAAATGATCTTGTTGGCCTAATTCCTGACGGCTTAGCGGATTTGGAGCTGATTAGTTTGGATTTGAATAATAATAACTTTATGGGTCCTATTCCGAAATTCAAAGCTGTTAATGCTAGTTTTAAATCAAACCCGTTTTGTGAACCGGATCCTGGGGTACCCTGTGCCCCAGAGGTTATGGCTCTTTTAGAGTTTCTTGATGGTGTAGGGTACCCTACAAGGCTTGTTTCTTCTTGGTCTGGTAATAATCCTTGTAATGGTCCATGGTTGGGTTTGAGTTGCAATACTAACCAGAAGGTCTCAATGATACACTTGCCCAAGTCTAATCTTAGTGGTACATTGAGCCCTTCGATAGCAAATCTTGATTCTATTGTTCAAATCAATCTCGGGTCGAATAAGCTAACGGGTTCAGTCCCATCAAATTGGACCAGCATCAAATCCTTGACACAATTGGATTTGAGTGACAACAACCTTTCCCCTCCCCTGCCTAATTTCACCACCAATGTGAAGCTTTTGTTGAACGGAAACCCTTTGTTGAATTCTAATCCGTCCGGGTCAACGTCTAGCCCACCGTCCAATGACTCACGGGTCTCACCCAACCACCCGCTTTCCCCTTCCGCCGGGTCAAGTTCTAATGCTACAAGTTCCATTAGCAAACCGTCTGATGCAAAAGGTTCAAGAAAGCCTAAATTAGTCATAATTGTGGCGCTTATTGCAAGTTTTGCAGTATTGGTGTTCTTGGTTGTGCCATTATTTGTCTATTTATGCAAGAAGAAAAAGAAGACCTACCAAGCTCCGGCTTCCCTCGTGATCCACCCTAGAGACCCGTCTGATCCTGATAATCTAGTCAAGATTGTGGTTGCTAATAACACTAACCCAAGTGTTTCTATGACGAGTACTGGGGGGAGTGGGTCTGGAAGTAGAGGGAGTAATGGGTCCCGTACAATCGAGGCGGGCAATTTGGTCATTTCAGTCCAAGTTCTTCGAAACGTGACCAAAAACTTCGCACCGGAAAATGAACTCGGTCGAGGCGGATTCGGGGTAGTGTACAAGGGAGAATTAGATGATGGGACCAAAATAGCGGTGAAAAGAATGGAAGCAGGTGTAATTAGTAACAAAGCTTTGGATGAATTTCAAGCCGAAATTGCGGTTTTATCCAAAGTTCGCCATCGGCATTTGGTGTCTCTTTTGGGGTATTCAACCGAAGGATATGAGAGGATTCTTGTTTATGAGTATATGCCGCAAGGAGCACTTAGTAAGCATTTGTTCCATTGGAAGAGCTTTAAGTTGGAGCCTTTATCTTGGAAGAGGAGACTAAATATTGCCCTGGATGTAGCTAGAGCAATGGAGTATCTTCATAATCTTGCTCATCAAAGCTTCATTCATAGAGATCTTAAATCCTCAAATATATTGCTTGGTGATGATTTTAGGGCGAAAGTTTCGGATTTTGGGTTGGTGAAACTTGCTCCTGATGGAGAGAAATCTGTTGTTACTCGGCTTGCTGGGACTTTTGGATACCTTGCACCTGAATATGCTGTGACCGGCAAAATCACTACAAAAGCCGACGTTTTCAGCTTCGGCGTGGTCCTAATGGAGCTACTAACCGGGCTAATGGCACTTGACGAGGACCGGCCAGAGGAGAGCCGTTACTTAGCCGCATGGTTTTGGCACATCAAGTCAGACAAAGACAAGCTAATGGCGGCCATTGACCCGGCCCTCGACTCCAAAGAAGACACCTTTGAGGCCATCTCGGTCATATCAGAGCTAGCCGGTCACTGCACCGCGAGGGAACCGAGCCAACGGCCCGACATGGGCCACACAGTCAATGTGCTAGGTCCGCTCGTCGAGAAGTGGAAACCACTAGACGATGACACCGAGGAGTATTGCGGTATCGACTATAGCCTCCCACTCAACCAAATGGTTAAAGGGTGGCAAGAAGCCGAGGGGAAAGACTCGAGTTACTTGGACCTTGACGATAGTAAGGGTAGTATACCGGCTCGACCCACCGGGTTCGCTGATTCGTTTACATCCGCGGATGGTAGGTGA

Network for GWHGAAZE003825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	68	0.0019
PF08263.13	LRRNT_2	333	370	0.00075
PF07714.18	PK_Tyr_Ser-Thr	613	884	1.00E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.778
	SRR3591706	second leaf	25.425
	SRR3591707	mature leaf	36.467
	SRR3591708	Shoot apex	20.281
	SRR3591709	Stem	15.739
	SRR3591710	White floral bud	8.984
	SRR3591711	White flower	7.233
	SRR3591712	Green floral bud	9.022
	SRR3591713	Yellow flower	1.196
SRP173429	SRR8316895	Juvenile bud stage	5.506
	SRR8316896	Juvenile bud stage	7.736
	SRR8316897	Juvenile bud stage	2.973
	SRR8316894	Third green stage	3.533
	SRR8316900	Third green stage	7.323
	SRR8316901	Third green stage	7.487
	SRR8316898	Complete white stage	2.245
	SRR8316899	Complete white stage	10.087
	SRR8316903	Complete white stage	4.284
	SRR8316902	Silver flowering stage	1.655
	SRR8316904	Silver flowering stage	2.860
	SRR8316905	Silver flowering stage	1.137
	SRR8316906	Gold flowering stage	3.613
	SRR8316907	Gold flowering stage	3.503
	SRR8316908	Gold flowering stage	2.835
SRP132670	SRR6706286	Control	7.787
	SRR6706287	Light intensity 50%	7.643
	SRR6706288	Light intensity 20%	7.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.159
	CNS0095593	Slightly white alabastrum(diploid) 2	5.759
	CNS0095594	Slightly white alabastrum(diploid) 3	3.486
	CNS0095595	Whole white alabastrum(diploid) 2	3.823
	CNS0095596	Whole white alabastrum(diploid) 3	2.879
	CNS0095597	Whole white alabastrum(diploid) 4	3.076
	CNS0095598	Silvery flower (diploied) 1	7.175
	CNS0095599	Silvery flower (diploied) 2	10.420
	CNS0095600	Silvery flower (diploied) 3	5.574
	CNS0095601	Golden flower (diploid) 1	10.239
	CNS0095602	Golden flower (diploid) 2	6.571
	CNS0095603	Golden flower (diploid) 3	6.343
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.640
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.896
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.316
	CNS0095610	Silvery flower (tetraploid) 1	4.822
	CNS0095611	Silvery flower (tetraploid) 2	5.969
	CNS0095612	Silvery flower (tetraploid) 3	2.605
	CNS0095613	Golden flower (tetraploid) 1	0.724
	CNS0095614	Golden flower (tetraploid) 2	2.678
	CNS0095615	Golden flower (tetraploid) 3	1.107
CRA001975	CRR073297	Stem 1	11.402
	CRR073298	Stem 2	10.034
	CRR073299	Stem 3	10.023
	CRR073300	Leaf 1	11.223
	CRR073301	Leaf 2	10.661
	CRR073302	Leaf 3	10.924
	CRR073303	Juvenile bud 1	9.992
	CRR073304	Juvenile bud 2	6.561
	CRR073305	Juvenile bud 3	12.548
	CRR073306	Third green 1	8.071
	CRR073307	Third green 2	4.148
	CRR073308	Third green 3	6.774
	CRR073309	Second white 1	7.988
	CRR073310	Second white 2	6.713
	CRR073311	Second white 3	4.880
	CRR073312	Silver flowering 1	2.357
	CRR073313	Silver flowering 2	2.295
	CRR073314	Silver flowering 3	2.375
	CRR073315	Gold flowering 1	8.057
	CRR073316	Gold flowering 2	11.113
	CRR073317	Gold flowering 3	13.976
	CRR073318	Tawny withering 1	20.248
	CRR073319	Tawny withering 2	13.590
	CRR073320	Tawny withering 3	14.596