Detail information of GWHGAAZE003816


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654149.10PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
Swissprottr|P42730|CLPB1_ARATH5E-14Chaperone protein ClpB1
trEMBLtr|F6HKR6|F6HKR6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55488.1}
TAIR10AT3G52490.10Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene104927309104930660-
GWHAAZE00000001mRNA104927309104930660-
GWHAAZE00000001exon104927309104928406-
GWHAAZE00000001exon104928535104928769-
GWHAAZE00000001exon104929555104930660-
GWHAAZE00000001CDS104929555104930660-
GWHAAZE00000001CDS104928535104928769-
GWHAAZE00000001CDS104927309104928406-
Transcript Sequence

Network for GWHGAAZE003816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02861.21Clp_N23480.1
PF02861.21Clp_N1381730.78
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0019538biological_processprotein metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.771
SRR3591706second leaf5.060
SRR3591707mature leaf0.997
SRR3591708Shoot apex8.021
SRR3591709Stem11.490
SRR3591710White floral bud3.091
SRR3591711White flower5.271
SRR3591712Green floral bud1.773
SRR3591713Yellow flower1.594
SRP173429 SRR8316895Juvenile bud stage 0.570
SRR8316896Juvenile bud stage 0.409
SRR8316897Juvenile bud stage 0.417
SRR8316894Third green stage 0.342
SRR8316900Third green stage 0.433
SRR8316901Third green stage 0.382
SRR8316898Complete white stage 0.015
SRR8316899Complete white stage 0.607
SRR8316903Complete white stage 0.224
SRR8316902Silver flowering stage0.157
SRR8316904Silver flowering stage0.186
SRR8316905Silver flowering stage0.180
SRR8316906Gold flowering stage 0.289
SRR8316907Gold flowering stage 1.396
SRR8316908Gold flowering stage 0.507
SRP132670SRR6706286Control0.280
SRR6706287Light intensity 50%0.309
SRR6706288Light intensity 20%0.383
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.613
CNS0095593Slightly white alabastrum(diploid) 21.348
CNS0095594Slightly white alabastrum(diploid) 31.431
CNS0095595Whole white alabastrum(diploid) 20.264
CNS0095596Whole white alabastrum(diploid) 30.519
CNS0095597Whole white alabastrum(diploid) 40.484
CNS0095598Silvery flower (diploied) 11.051
CNS0095599Silvery flower (diploied) 20.836
CNS0095600Silvery flower (diploied) 31.253
CNS0095601Golden flower (diploid) 10.716
CNS0095602Golden flower (diploid) 20.324
CNS0095603Golden flower (diploid) 30.727
CNS0095604Slightly white alabastrum(tetraploid) 12.423
CNS0095605Slightly white alabastrum(tetraploid) 22.137
CNS0095606Slightly white alabastrum(tetraploid) 33.491
CNS0095607Whole white alabastrum(tetraploid) 11.046
CNS0095608Whole white alabastrum(tetraploid) 20.094
CNS0095609Whole white alabastrum(tetraploid) 30.328
CNS0095610Silvery flower (tetraploid) 13.746
CNS0095611Silvery flower (tetraploid) 22.222
CNS0095612Silvery flower (tetraploid) 35.792
CNS0095613Golden flower (tetraploid) 10.972
CNS0095614Golden flower (tetraploid) 22.382
CNS0095615Golden flower (tetraploid) 31.444
CRA001975CRR073297Stem 11.778
CRR073298Stem 21.503
CRR073299Stem 32.668
CRR073300Leaf 10.515
CRR073301Leaf 20.719
CRR073302Leaf 30.158
CRR073303Juvenile bud 10.503
CRR073304Juvenile bud 20.113
CRR073305Juvenile bud 30.424
CRR073306Third green 11.899
CRR073307Third green 21.407
CRR073308Third green 31.318
CRR073309Second white 10.309
CRR073310Second white 20.713
CRR073311Second white 30.375
CRR073312Silver flowering 10.049
CRR073313Silver flowering 20.403
CRR073314Silver flowering 30.415
CRR073315Gold flowering 10.998
CRR073316Gold flowering 20.866
CRR073317Gold flowering 31.913
CRR073318Tawny withering 14.524
CRR073319Tawny withering 22.052
CRR073320Tawny withering 33.925