Gene detail

Detail information of GWHGAAZE003783

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK79026.1	0	cytochrome P450 CYP82T1 [Bupleurum chinense]
COG	YP_003385314.1	8E-35	cytochrome P450
Swissprot	tr\|Q9SZ46\|C82C4_ARATH	0	Cytochrome P450 82C4
trEMBL	tr\|I3VI20\|I3VI20_BUPCH	0	Cytochrome P450 CYP82T1 {ECO:0000313\|EMBL:AFK79026.1}
TAIR10	AT4G31940.1	2E-149	cytochrome P450, family 82, subfamily C, polypeptide 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	104210884	104213877	-
GWHAAZE00000001	mRNA	104210884	104213877	-
GWHAAZE00000001	exon	104210884	104211504	-
GWHAAZE00000001	exon	104211900	104212286	-
GWHAAZE00000001	exon	104213245	104213877	-
GWHAAZE00000001	CDS	104213245	104213877	-
GWHAAZE00000001	CDS	104211900	104212286	-
GWHAAZE00000001	CDS	104210884	104211504	-

Transcript Sequence
>GWHTAAZE003789 ATGCTAAACCATTTAAATACTTGGGGCAAGGCACCAATTACTTGTAACTTTGAAGCCTATAATTTTTTGTCTCTCTCAAATCACAATATGCTACCTCTAGTTCTTGAAGCCAGCGCTACTCTTGTGGCATTGATTTTTATCTACAAATTTTGTAGATTCAAAACCAACAAACAAATCCAAGCCCCCGAGCCAAGTGGTGCATGGCCGATTATAGGTCACCTCCATTTTCTCGGCAACCAAACAAGTGTTTGCAGAACCTTAGCCGCAATGGCGGACAAACACGGCCCGGTTTTCAAAATCCGACTGGGCATGCGCAACGCATTGATCGTGAGTGGCAAGGAAGCAGTCACCGAATGCTTCACTAAAAATGACCGCGTTTTCTTGACTCGCCCGCAAACTGTAGCCTGGACCCACATGGGCTATAATGGCGCTTTTTTTGGGTTGGCTCCTTACAGCCCTTTTTGGCAAGAGATGCGCAAAATCTCCACCCTTGAACTTCTGTCAAACCGCCGCCTTGAGATGCTCAAATCCATTAGAGCCTCGGAGTTGGGCAGTTGCATCAAAGACTTGTACACTCTTTGCATTGCAAAGAGTGCAGGTACCACATTTGATATCGGTAGATGGTTTCAACAGGTGACTATGAACACGATGATACAAATGATTGCAGGGAAGCGATACAGTGTGATTGGCGACGCTGAGACCGAGGTGGAATCTAGACGATTTGAGAAAGCAATGAAAGAATTTATGCATCTAAGTGGCGTTTTTGAATTTTCAGATGTGTTTCCATTTATTGAGTGGATTGATTTACAGGGACAAGTGAAGCGTATGAAGAAAGTTGCTAAGGAGTTAGATTATTTCATGAGTAGTTGGATTGAAGAACATGTAATTGAGAGAAGGCAAAAGGGGGTTAATGTGAGAAACCATGAAGGAGACTTCATGGATGTGATGCTATCTTTGTTTGAAAATGATGATTTTGTGCAGGGTCACAAGAGCAAAGATGTTATCAAGGCAACATCACTGAATCTTATCTTAGCAGGCGCAGATACTACCGCAATCACTATGACCTGGGCACTCTCCTTGTTACTAAACCATGATAAAGTACTAAAGAGAGCTCAAGAGGAACTTGATACCCAAGTTGGAAAGGAAAGACTAGTGGAAGAGTCAGACATCAAGAACTTGGTATATTTCCAAGCCATTGTTAAAGAAACAATGCGACTGTACCCTGCTGGTCCCTTATTAGTCCCTCGTGAGGCCATGGAAGATTGTTACGTAGGAGGCTACCATGTCCCCAAAGGGACGCGTTTGCTAGTGAACATATGGAAGTTGCATCGTGACCCAAGCACATGGACTGACTCACTCGAGTTCCAACCCGAGAGATTTCTAACTAGCCATACACATGTTGATGTTAGAGGGCGACAATTTGAGTTCATTCCTTTCAGCTCCGGTAGAAGAGTTTGTCCAGGAATTACAGCAGCCATGCAGACTATACAATTGACGCTAGCTCGACTTCTTCAGAGCTTCAGTGTTGCTACTCCTTCAAATGCACCGGTGGACATGGGGGAAGGCTCGGGGTTATCAATGCCTAAAATAGATCCATTAGAAGTTGTGCTCACCCCACGCCTCCCAGCTAAGATGTATTAA

Network for GWHGAAZE003783

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	62	529	6.90E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.677
	SRR3591706	second leaf	20.180
	SRR3591707	mature leaf	16.296
	SRR3591708	Shoot apex	12.518
	SRR3591709	Stem	11.872
	SRR3591710	White floral bud	422.183
	SRR3591711	White flower	493.754
	SRR3591712	Green floral bud	21.925
	SRR3591713	Yellow flower	239.816
SRP173429	SRR8316895	Juvenile bud stage	8.453
	SRR8316896	Juvenile bud stage	6.543
	SRR8316897	Juvenile bud stage	6.711
	SRR8316894	Third green stage	3.954
	SRR8316900	Third green stage	6.993
	SRR8316901	Third green stage	5.154
	SRR8316898	Complete white stage	0.534
	SRR8316899	Complete white stage	13.575
	SRR8316903	Complete white stage	2.084
	SRR8316902	Silver flowering stage	1.121
	SRR8316904	Silver flowering stage	1.800
	SRR8316905	Silver flowering stage	0.411
	SRR8316906	Gold flowering stage	1.990
	SRR8316907	Gold flowering stage	2.890
	SRR8316908	Gold flowering stage	4.871
SRP132670	SRR6706286	Control	4.032
	SRR6706287	Light intensity 50%	5.339
	SRR6706288	Light intensity 20%	6.243
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.926
	CNS0095593	Slightly white alabastrum(diploid) 2	8.650
	CNS0095594	Slightly white alabastrum(diploid) 3	12.561
	CNS0095595	Whole white alabastrum(diploid) 2	7.027
	CNS0095596	Whole white alabastrum(diploid) 3	1.256
	CNS0095597	Whole white alabastrum(diploid) 4	9.791
	CNS0095598	Silvery flower (diploied) 1	19.606
	CNS0095599	Silvery flower (diploied) 2	17.934
	CNS0095600	Silvery flower (diploied) 3	3.262
	CNS0095601	Golden flower (diploid) 1	9.403
	CNS0095602	Golden flower (diploid) 2	6.129
	CNS0095603	Golden flower (diploid) 3	5.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.386
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.193
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.500
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.376
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.926
	CNS0095610	Silvery flower (tetraploid) 1	1.812
	CNS0095611	Silvery flower (tetraploid) 2	2.776
	CNS0095612	Silvery flower (tetraploid) 3	2.523
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.240
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	11.220
	CRR073298	Stem 2	11.411
	CRR073299	Stem 3	13.794
	CRR073300	Leaf 1	7.209
	CRR073301	Leaf 2	6.778
	CRR073302	Leaf 3	6.471
	CRR073303	Juvenile bud 1	3.376
	CRR073304	Juvenile bud 2	1.524
	CRR073305	Juvenile bud 3	5.122
	CRR073306	Third green 1	9.978
	CRR073307	Third green 2	5.039
	CRR073308	Third green 3	5.514
	CRR073309	Second white 1	8.175
	CRR073310	Second white 2	8.302
	CRR073311	Second white 3	6.763
	CRR073312	Silver flowering 1	2.075
	CRR073313	Silver flowering 2	2.508
	CRR073314	Silver flowering 3	2.286
	CRR073315	Gold flowering 1	23.735
	CRR073316	Gold flowering 2	46.608
	CRR073317	Gold flowering 3	28.700
	CRR073318	Tawny withering 1	4.472
	CRR073319	Tawny withering 2	2.004
	CRR073320	Tawny withering 3	3.821