Gene detail

Detail information of GWHGAAZE003781

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK79026.1	0	cytochrome P450 CYP82T1 [Bupleurum chinense]
COG	YP_003385314.1	1E-34	cytochrome P450
Swissprot	tr\|Q9SZ46\|C82C4_ARATH	0	Cytochrome P450 82C4
trEMBL	tr\|I3VI20\|I3VI20_BUPCH	0	Cytochrome P450 CYP82T1 {ECO:0000313\|EMBL:AFK79026.1}
TAIR10	AT4G31940.1	5E-150	cytochrome P450, family 82, subfamily C, polypeptide 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	104085607	104088688	-
GWHAAZE00000001	mRNA	104085607	104088688	-
GWHAAZE00000001	exon	104085607	104086227	-
GWHAAZE00000001	exon	104086739	104087125	-
GWHAAZE00000001	exon	104088056	104088688	-
GWHAAZE00000001	CDS	104088056	104088688	-
GWHAAZE00000001	CDS	104086739	104087125	-
GWHAAZE00000001	CDS	104085607	104086227	-

Transcript Sequence
>GWHTAAZE003787 ATGTTAAACCACTTAAATACTAGGGGCAAGGCACCAGTTACTTGTAACTTTGAAGCCTATAATTCTCTCTCACACACAAATCACAATATGCTACCTCTAGTTCTTGAAGCCACCGTTACTCTTGTGGCATTGATTTTTATCTACAAATTTTGTAGATTCAAAACCAACAAACAAATCCAAGCCCCCGAGCCAAGTGGCGCATGGCCGATTATAGGTCACCTCCATTTTCTCGGCAACCAAACCAGTGTTTGCAGAACCTTAGCTGCAATGGCGGACAAACACGGTCCAGTTTTCAAAATCCGACTGGGCATGCGCAATGCATTGGTTGTGAGTGGCAAGGAAGCAGTTACCGAATGCTTCACTAAAAATGACCGCGTTTTCTTGACTCGCCCGCAAACTGTAGCCTTCACCCACTTGGGCTATAATGGCGCTTTCTTCGCGTTCGCCCCTTACAGCCCTTTTTGGAACGAGATGCGCAAAATCTCCACCCTTGAGATTCTATCAAACCGCCGCCTTGAGATGCTCAAATGCGTTAGAGCCTCAGAGTTGGGCCGTTGCATCAAAGACTTGTACACTCTTTGCATTGCTAAGAGTGCAGGTACCACATTTGATATTGGTAGATGGTTGCAACAGGTGACTATGAACACGATGATACAAATGATTGCAGGGAAGCGATACAGTGTGATTGGTGATGCTGAGACCGACGTGGAATTTAGACGATTTGAGAAAGCAATCAAAGAATTTAATTATCTAAGTGGCGTTTTTGAATTTTCAGATGTGTTTCCATTTATTGAGTGGATTGATTTACAGGGACAAGTGACGCGTATGAAGAAAGCTGCTAAGGAGTTAGATTATTTCATGAGTAGTTGGATTGAAGAACATGTAATTGAGAGAAGGCAAAAGGGGGTTAATGTGAGAAACCATGAAGGAGACTTCATGGATGTGATGCTATCTTTGTTTGAAAATGATGATTTTGTACAGGGTCACAAGAGCAAAGATGTTATCAAGGCAACATCACTGGCTCTTATCGTTGCAGGCTCAGATACCACAGCAATCACAATGACCTGGGCACTCTCCTTGTTACTAAACCATGATAAAGTACTAAAGAGAGCTCAAGAGGAACTTGATACCCAAGTTGGAAAGGAAAGACTAGTGGAAGAGTCAGACATCAAGAACTTAGTATATTTACAAGCCATTGTCAAAGAAACAATGCGACTGTACCCTGGTGGTCCTTTATCAATCCCTCGTGAGGCCATGGAAGATTGTTACGTAGGAGGCTACCACGTCCCCAAAGGGACGCGTTTACTAGTGAACATGTGGAAGTTGCATCGTGACCCAAGCACATGGACTGACCCACTCGAGTTCCAACCCGAGAGATTTCTAACTAGCCATACACATGTTGATGTAAGAGGGCAACAACTTGAATTGATTCCTTTCAGCTCAGGGAGAAGAGCTTGTCCGGGAATTACAGCAGCCATGCAGATTATACACTTGACGCTAGCTCGTCTACTTCAGAGCTTCAGTGTTGCTACTCCTTCAAATGCACCAGTGGACATGGGGGAAGGCTCGGGATTAACAATGCCTAAAATAGATCCATTAGAAGTTGTGCTCACCCCACGCCTCCCAGCTAAGTTGTATTAA

Network for GWHGAAZE003781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	62	529	5.30E-95

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.862
	SRR3591706	second leaf	0.869
	SRR3591707	mature leaf	0.412
	SRR3591708	Shoot apex	0.412
	SRR3591709	Stem	0.482
	SRR3591710	White floral bud	7.269
	SRR3591711	White flower	6.326
	SRR3591712	Green floral bud	1.215
	SRR3591713	Yellow flower	3.221
SRP173429	SRR8316895	Juvenile bud stage	7.647
	SRR8316896	Juvenile bud stage	6.247
	SRR8316897	Juvenile bud stage	2.189
	SRR8316894	Third green stage	1.490
	SRR8316900	Third green stage	0.054
	SRR8316901	Third green stage	0.553
	SRR8316898	Complete white stage	0.125
	SRR8316899	Complete white stage	0.206
	SRR8316903	Complete white stage	0.063
	SRR8316902	Silver flowering stage	0.022
	SRR8316904	Silver flowering stage	0.053
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	0.298
	SRR6706287	Light intensity 50%	0.403
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.433
	CNS0095593	Slightly white alabastrum(diploid) 2	0.025
	CNS0095594	Slightly white alabastrum(diploid) 3	2.431
	CNS0095595	Whole white alabastrum(diploid) 2	0.084
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.072
	CNS0095598	Silvery flower (diploied) 1	0.228
	CNS0095599	Silvery flower (diploied) 2	0.139
	CNS0095600	Silvery flower (diploied) 3	0.014
	CNS0095601	Golden flower (diploid) 1	0.182
	CNS0095602	Golden flower (diploid) 2	0.022
	CNS0095603	Golden flower (diploid) 3	0.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.120
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.094
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.038
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.035
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.049
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	20.702
	CRR073298	Stem 2	9.596
	CRR073299	Stem 3	23.979
	CRR073300	Leaf 1	0.036
	CRR073301	Leaf 2	0.048
	CRR073302	Leaf 3	0.020
	CRR073303	Juvenile bud 1	0.006
	CRR073304	Juvenile bud 2	0.019
	CRR073305	Juvenile bud 3	0.012
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.032
	CRR073309	Second white 1	0.007
	CRR073310	Second white 2	0.041
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.048
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.068
	CRR073317	Gold flowering 3	0.019
	CRR073318	Tawny withering 1	1.509
	CRR073319	Tawny withering 2	0.599
	CRR073320	Tawny withering 3	4.512