Gene detail

Detail information of GWHGAAZE003775

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007049016.1	0	SCL domain class transcription factor [Theobroma cacao]
Swissprot	tr\|Q9FHZ1\|SCL23_ARATH	3E-162	Scarecrow-like protein 23
trEMBL	tr\|A0A061DTB2\|A0A061DTB2_THECC	0	SCL domain class transcription factor {ECO:0000313\|EMBL:EOX93173.1}
TAIR10	AT5G41920.1	1E-126	GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	103916852	103918671	+
GWHAAZE00000001	mRNA	103916852	103918671	+
GWHAAZE00000001	exon	103916852	103917336	+
GWHAAZE00000001	exon	103917894	103918671	+
GWHAAZE00000001	CDS	103916852	103917336	+
GWHAAZE00000001	CDS	103917894	103918671	+

Transcript Sequence
>GWHTAAZE003781 ATGCTTCAAAGCCTAATCCCTAGATCCCCCAATTCATCCTCAATAATCTCCACCTCCTCCATGAGACCCACCACCAAACGAACCGCCGACGACCTTCCCGCCGCCGGTGAATCCTCCGACGACACCTCCCTCAAGCGCCGCAACCTCTCCGCCGGAGAGGCCTCAATTTCTGGAGAAAAACCGGCCACCGAGCCAGAAGAAGAAACCGGAATCGAGGCCGAATCGACCGGTCTACGCCTCCTGGGGCTGTTGCTACAATGCGCCGAGTGCGTAGCGGTGGACAATCTGGACGAAGCGAGCGATCTATTGCCGGAGATATCGGAGCTATCGTCGCCGTTCGGATCTTCGCCGGAGAGAGTGGCGGCCTACTTTGCTGAAGCTTTACAGGCGAGGATTATAAGTTCATGTCTCGGGACTTACTCGCCGATAAACATCAAAACCCTAACCCTAGCTCACAGCCACCGGATCTGTAGTTCTTTGCAGTCCGAGGATCATGTCCATGTCATTGATCTAGACATAATGCAAGGCCTCCAATGGCCAGGATTGTTTCATATCCTGGCCTCCCGGACCCGCAAGATGCGATCCATTCGAATCACCGGCGTCGGATCCTCTATTGAGCTACTTGTGGCGACTGGCCGGCGACTGGCCGATTTCGCTAGTTCACTTGGCCTCCCCTTCGAGTTCCACCCCCTCGAAGGCAAAATCGGAAACATAACCAACATGAACCAACTCGGAATCAAAATCGGTGAAACCACTGTGGTCCATTGGATGCATCACTGCTTGTACGATGTTACAGGGAGCGATCTAGGCACGTTGAGAATGTTAAGTTTGTTGAGACCGAAACTGATAACTATCGTTGAACAAGATTTAAGCCACGGAGGGAGCTTTTTGGGGCGATTCGTGGAGGCATTGCATTATTACTCGGCGCTATTTGATGCTTTGGGAGATGGTTTGAGAGACGATAGTATCGAAAGGCACACAGTGGAGCATCAGTTATTTGGCTGTGAGATCAGGAACATCGTGGCCGTTGGTGGGCCAAAGAGGACGGGAGAGGTTAAAGTTGAGAGGTGGGGGGATGAGCTGAGGAGGAGCGGGTTTCAACCCGTTTCTTTGGCGGGAAACCCGGCTGCTCAGGCGAGTTTGTTGCTGGGGATGTTTCCATGGAAAGGGTATACATTGGTTGAGGAAAATGGGTCATTGAAATTGGGTTGGAAGGATTTGTCATTGTTAACTGCTTCTGCTTGGCAACCTTCACTGGAGTGA

Network for GWHGAAZE003775

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.15	GRAS	82	149	8.10E-15
PF03514.15	GRAS	153	416	4.20E-78

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.788
	SRR3591706	second leaf	15.343
	SRR3591707	mature leaf	25.551
	SRR3591708	Shoot apex	13.057
	SRR3591709	Stem	14.235
	SRR3591710	White floral bud	12.047
	SRR3591711	White flower	22.361
	SRR3591712	Green floral bud	14.859
	SRR3591713	Yellow flower	14.852
SRP173429	SRR8316895	Juvenile bud stage	6.269
	SRR8316896	Juvenile bud stage	6.744
	SRR8316897	Juvenile bud stage	2.707
	SRR8316894	Third green stage	4.072
	SRR8316900	Third green stage	10.770
	SRR8316901	Third green stage	10.850
	SRR8316898	Complete white stage	6.560
	SRR8316899	Complete white stage	20.927
	SRR8316903	Complete white stage	8.647
	SRR8316902	Silver flowering stage	2.906
	SRR8316904	Silver flowering stage	4.302
	SRR8316905	Silver flowering stage	2.581
	SRR8316906	Gold flowering stage	4.624
	SRR8316907	Gold flowering stage	5.440
	SRR8316908	Gold flowering stage	5.988
SRP132670	SRR6706286	Control	13.891
	SRR6706287	Light intensity 50%	14.737
	SRR6706288	Light intensity 20%	14.809
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.168
	CNS0095593	Slightly white alabastrum(diploid) 2	8.618
	CNS0095594	Slightly white alabastrum(diploid) 3	6.382
	CNS0095595	Whole white alabastrum(diploid) 2	8.278
	CNS0095596	Whole white alabastrum(diploid) 3	6.762
	CNS0095597	Whole white alabastrum(diploid) 4	6.996
	CNS0095598	Silvery flower (diploied) 1	11.893
	CNS0095599	Silvery flower (diploied) 2	8.863
	CNS0095600	Silvery flower (diploied) 3	12.703
	CNS0095601	Golden flower (diploid) 1	5.494
	CNS0095602	Golden flower (diploid) 2	6.622
	CNS0095603	Golden flower (diploid) 3	7.632
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.875
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.048
	CNS0095610	Silvery flower (tetraploid) 1	11.910
	CNS0095611	Silvery flower (tetraploid) 2	13.497
	CNS0095612	Silvery flower (tetraploid) 3	13.182
	CNS0095613	Golden flower (tetraploid) 1	6.122
	CNS0095614	Golden flower (tetraploid) 2	9.631
	CNS0095615	Golden flower (tetraploid) 3	5.790
CRA001975	CRR073297	Stem 1	13.188
	CRR073298	Stem 2	13.493
	CRR073299	Stem 3	18.876
	CRR073300	Leaf 1	13.842
	CRR073301	Leaf 2	11.960
	CRR073302	Leaf 3	16.200
	CRR073303	Juvenile bud 1	15.333
	CRR073304	Juvenile bud 2	13.629
	CRR073305	Juvenile bud 3	19.304
	CRR073306	Third green 1	9.623
	CRR073307	Third green 2	10.060
	CRR073308	Third green 3	6.866
	CRR073309	Second white 1	5.720
	CRR073310	Second white 2	4.543
	CRR073311	Second white 3	3.275
	CRR073312	Silver flowering 1	4.504
	CRR073313	Silver flowering 2	4.901
	CRR073314	Silver flowering 3	3.292
	CRR073315	Gold flowering 1	20.422
	CRR073316	Gold flowering 2	27.136
	CRR073317	Gold flowering 3	25.168
	CRR073318	Tawny withering 1	15.101
	CRR073319	Tawny withering 2	11.076
	CRR073320	Tawny withering 3	14.187