Detail information of GWHGAAZE003748


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002274926.11.6974E-137PREDICTED: ADP-ribosylation factor 1-like 2 [Vitis vinifera]
COGYP_001737337.11E-35small GTP-binding protein
Swissprottr|Q06396|ARF1_ORYSJ3E-80ADP-ribosylation factor 1
trEMBLtr|A5B0V8|A5B0V8_VITVI6E-138Putative uncharacterized protein {ECO:0000313|EMBL:CAN63035.1}
TAIR10AT5G17060.14E-104ADP-ribosylation factor B1B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene103299126103309453-
GWHAAZE00000001mRNA103299126103309453-
GWHAAZE00000001exon103309397103309453-
GWHAAZE00000001exon103308569103308659-
GWHAAZE00000001exon103306869103306984-
GWHAAZE00000001exon103306417103306476-
GWHAAZE00000001exon103306267103306332-
GWHAAZE00000001exon103299126103299317-
GWHAAZE00000001CDS103309397103309453-
GWHAAZE00000001CDS103308569103308659-
GWHAAZE00000001CDS103306869103306984-
GWHAAZE00000001CDS103306417103306476-
GWHAAZE00000001CDS103306267103306332-
GWHAAZE00000001CDS103299126103299317-
Transcript Sequence

Network for GWHGAAZE003748

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.22Arf61761.60E-69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1_2 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.892
SRR3591706second leaf25.657
SRR3591707mature leaf33.772
SRR3591708Shoot apex32.203
SRR3591709Stem62.776
SRR3591710White floral bud53.338
SRR3591711White flower64.001
SRR3591712Green floral bud59.239
SRR3591713Yellow flower66.027
SRP173429 SRR8316895Juvenile bud stage 31.089
SRR8316896Juvenile bud stage 45.155
SRR8316897Juvenile bud stage 22.753
SRR8316894Third green stage 17.674
SRR8316900Third green stage 56.006
SRR8316901Third green stage 53.507
SRR8316898Complete white stage 26.989
SRR8316899Complete white stage 63.551
SRR8316903Complete white stage 43.693
SRR8316902Silver flowering stage33.772
SRR8316904Silver flowering stage38.340
SRR8316905Silver flowering stage20.933
SRR8316906Gold flowering stage 74.260
SRR8316907Gold flowering stage 72.073
SRR8316908Gold flowering stage 79.064
SRP132670SRR6706286Control32.314
SRR6706287Light intensity 50%36.142
SRR6706288Light intensity 20%38.072
CNP0000432CNS0095592Slightly white alabastrum(diploid) 154.665
CNS0095593Slightly white alabastrum(diploid) 252.450
CNS0095594Slightly white alabastrum(diploid) 356.100
CNS0095595Whole white alabastrum(diploid) 250.288
CNS0095596Whole white alabastrum(diploid) 344.634
CNS0095597Whole white alabastrum(diploid) 458.636
CNS0095598Silvery flower (diploied) 149.745
CNS0095599Silvery flower (diploied) 248.399
CNS0095600Silvery flower (diploied) 364.836
CNS0095601Golden flower (diploid) 156.095
CNS0095602Golden flower (diploid) 253.714
CNS0095603Golden flower (diploid) 353.884
CNS0095604Slightly white alabastrum(tetraploid) 146.622
CNS0095605Slightly white alabastrum(tetraploid) 241.089
CNS0095606Slightly white alabastrum(tetraploid) 345.750
CNS0095607Whole white alabastrum(tetraploid) 156.111
CNS0095608Whole white alabastrum(tetraploid) 258.492
CNS0095609Whole white alabastrum(tetraploid) 342.939
CNS0095610Silvery flower (tetraploid) 166.919
CNS0095611Silvery flower (tetraploid) 248.216
CNS0095612Silvery flower (tetraploid) 346.392
CNS0095613Golden flower (tetraploid) 157.332
CNS0095614Golden flower (tetraploid) 251.078
CNS0095615Golden flower (tetraploid) 352.712
CRA001975CRR073297Stem 142.399
CRR073298Stem 241.559
CRR073299Stem 335.271
CRR073300Leaf 143.540
CRR073301Leaf 242.678
CRR073302Leaf 337.950
CRR073303Juvenile bud 147.842
CRR073304Juvenile bud 234.029
CRR073305Juvenile bud 349.987
CRR073306Third green 124.617
CRR073307Third green 227.122
CRR073308Third green 331.893
CRR073309Second white 136.964
CRR073310Second white 232.170
CRR073311Second white 329.229
CRR073312Silver flowering 133.050
CRR073313Silver flowering 237.410
CRR073314Silver flowering 333.830
CRR073315Gold flowering 150.107
CRR073316Gold flowering 247.991
CRR073317Gold flowering 338.131
CRR073318Tawny withering 161.904
CRR073319Tawny withering 289.605
CRR073320Tawny withering 367.737