Gene detail

Detail information of GWHGAAZE003742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010243468.1	2.781E-136	PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
COG	YP_006863204.1	0.000006	50S ribosomal protein L13e
Swissprot	tr\|P41129\|RL132_BRANA	5E-128	60S ribosomal protein L13-2
trEMBL	tr\|A0A067JD82\|A0A067JD82_JATCU	8E-136	60S ribosomal protein L13 {ECO:0000256\|RuleBase:RU000572}
TAIR10	AT3G49010.3	3E-85	breast basic conserved 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	103194641	103196572	-
GWHAAZE00000001	mRNA	103194641	103196572	-
GWHAAZE00000001	exon	103196467	103196572	-
GWHAAZE00000001	exon	103196222	103196355	-
GWHAAZE00000001	exon	103195295	103195453	-
GWHAAZE00000001	exon	103194641	103195192	-
GWHAAZE00000001	CDS	103196467	103196572	-
GWHAAZE00000001	CDS	103196222	103196355	-
GWHAAZE00000001	CDS	103195295	103195453	-
GWHAAZE00000001	CDS	103194971	103195192	-
GWHAAZE00000001	three_prime_UTR	103194641	103194970	-

Transcript Sequence
>GWHTAAZE003748 ATGAAGCATAACAATGTGATACCCAATGGGCACTTCAAAAAGCACTGGCAGAACTATGTGAGGACATGGTTTAACCAACCCGCCCGCAAAACCAGGAGAAGAGTCGCCAGGCAAAAGAAGGCTGTGAAGATCTTTCCTCGACCTACAGCTGGGCCTCTTCGTCCTGTTGTCCATGGACAGACATTGAAGTACAACATGAAAGTCAGGGCTGGTAGGGGATTTTCTCTTGAGGAGCTCAAGGCTGCAGGCATTCCGAAAAAACTTGCCCCAACTGTTGGCATTTCAGTTGATCATCGACGTCGCAACCGTTCTCTAGAGGGTCTTCAGACTAATGTCCAGAGGCTGAAGACATACAAGGCCAAATTAGTTGTCTTCCCAAGGCGTGCCCGCAAGTTCAAGGCTGGTGATTCGGCTCCTGAGGAACTGGCAACAGCTACTCAAGTCCAAGGTGCTTACATGCCAATTGGGGTTGAGCAGCCATCTGTGGAGCTTGTTAAGGTTACAGATGAGATGAAGTCTTTCAATGCATATGCTAAATTGCGTGTGGAACGGATGAATGCGCGCCATGTTGGTGTTAGAATGAAGAAGGCAGCAGAGGCCGAGAAGGAAGAGAAGAAGTAGAGTGAGGTCCACATGCCAAAAAACATTGAAATGTCTTTTTGAAAATTTAAGTAGTGTTGGTTTTTTTTGCGTCAGCTGATTTTGATGAAGTTTAAGATTTGTTTTTAATCGAAGGCTTATATCACTGATAATATTTTATATGTGTTTTGTTTCTGGATCTTTGGTTTATTAGGGATGTGTTACCTTGCTTTCTGGATAGAAATTTACTTTGCAACTACTCCTCGGCCCCTTCATCTTCCCTTAATCAATTTGGTTAGCTCTTGGCAGTTGGCACTTTCTTGCAACATTACAGTAAATATTTATATACATATGATGGCAATTCAAGGTGGT

Network for GWHGAAZE003742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01294.19	Ribosomal_L13e	6	184	2.40E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02873	RP-L13e, RPL13	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	111.261
	SRR3591706	second leaf	52.001
	SRR3591707	mature leaf	26.743
	SRR3591708	Shoot apex	132.041
	SRR3591709	Stem	53.135
	SRR3591710	White floral bud	47.758
	SRR3591711	White flower	48.526
	SRR3591712	Green floral bud	109.417
	SRR3591713	Yellow flower	39.651
SRP173429	SRR8316895	Juvenile bud stage	33.441
	SRR8316896	Juvenile bud stage	49.429
	SRR8316897	Juvenile bud stage	27.946
	SRR8316894	Third green stage	18.262
	SRR8316900	Third green stage	47.833
	SRR8316901	Third green stage	51.580
	SRR8316898	Complete white stage	8.345
	SRR8316899	Complete white stage	36.339
	SRR8316903	Complete white stage	10.319
	SRR8316902	Silver flowering stage	7.950
	SRR8316904	Silver flowering stage	8.734
	SRR8316905	Silver flowering stage	6.706
	SRR8316906	Gold flowering stage	17.142
	SRR8316907	Gold flowering stage	21.273
	SRR8316908	Gold flowering stage	18.949
SRP132670	SRR6706286	Control	57.664
	SRR6706287	Light intensity 50%	56.607
	SRR6706288	Light intensity 20%	59.762
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.239
	CNS0095593	Slightly white alabastrum(diploid) 2	64.783
	CNS0095594	Slightly white alabastrum(diploid) 3	63.399
	CNS0095595	Whole white alabastrum(diploid) 2	47.938
	CNS0095596	Whole white alabastrum(diploid) 3	62.139
	CNS0095597	Whole white alabastrum(diploid) 4	45.881
	CNS0095598	Silvery flower (diploied) 1	32.044
	CNS0095599	Silvery flower (diploied) 2	29.358
	CNS0095600	Silvery flower (diploied) 3	20.026
	CNS0095601	Golden flower (diploid) 1	29.737
	CNS0095602	Golden flower (diploid) 2	22.267
	CNS0095603	Golden flower (diploid) 3	25.521
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.852
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.478
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.547
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.142
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.902
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.026
	CNS0095610	Silvery flower (tetraploid) 1	5.140
	CNS0095611	Silvery flower (tetraploid) 2	7.693
	CNS0095612	Silvery flower (tetraploid) 3	6.481
	CNS0095613	Golden flower (tetraploid) 1	3.535
	CNS0095614	Golden flower (tetraploid) 2	3.596
	CNS0095615	Golden flower (tetraploid) 3	2.849
CRA001975	CRR073297	Stem 1	47.615
	CRR073298	Stem 2	41.938
	CRR073299	Stem 3	55.051
	CRR073300	Leaf 1	45.301
	CRR073301	Leaf 2	49.348
	CRR073302	Leaf 3	64.824
	CRR073303	Juvenile bud 1	51.080
	CRR073304	Juvenile bud 2	32.308
	CRR073305	Juvenile bud 3	37.259
	CRR073306	Third green 1	11.397
	CRR073307	Third green 2	13.019
	CRR073308	Third green 3	10.933
	CRR073309	Second white 1	15.048
	CRR073310	Second white 2	11.411
	CRR073311	Second white 3	8.798
	CRR073312	Silver flowering 1	7.328
	CRR073313	Silver flowering 2	7.022
	CRR073314	Silver flowering 3	8.645
	CRR073315	Gold flowering 1	32.691
	CRR073316	Gold flowering 2	33.556
	CRR073317	Gold flowering 3	32.146
	CRR073318	Tawny withering 1	55.738
	CRR073319	Tawny withering 2	50.255
	CRR073320	Tawny withering 3	55.642