Detail information of GWHGAAZE003737


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007043163.10Multidrug/pheromone exporter, MDR family, ABC transporter family [Theobroma cacao]
COGYP_005367043.16E-97efflux ABC transporter permease/ATP-binding protein
Swissprottr|Q9LJX0|AB19B_ARATH0ABC transporter B family member 19
trEMBLtr|A0A061E1R6|A0A061E1R6_THECC0Multidrug/pheromone exporter, MDR family, ABC transporter family {ECO:0000313|EMBL:EOX98994.1}
TAIR10AT3G28860.10ATP binding cassette subfamily B19

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene103131924103139344-
GWHAAZE00000001mRNA103131924103139344-
GWHAAZE00000001exon103139090103139344-
GWHAAZE00000001exon103138903103138957-
GWHAAZE00000001exon103138610103138720-
GWHAAZE00000001exon103137018103137121-
GWHAAZE00000001exon103136643103136902-
GWHAAZE00000001exon103136223103136539-
GWHAAZE00000001exon103135767103135990-
GWHAAZE00000001exon103134075103134418-
GWHAAZE00000001exon103133540103133979-
GWHAAZE00000001exon103131924103133404-
GWHAAZE00000001CDS103139090103139344-
GWHAAZE00000001CDS103138903103138957-
GWHAAZE00000001CDS103138610103138720-
GWHAAZE00000001CDS103137018103137121-
GWHAAZE00000001CDS103136643103136902-
GWHAAZE00000001CDS103136223103136539-
GWHAAZE00000001CDS103135767103135990-
GWHAAZE00000001CDS103134075103134418-
GWHAAZE00000001CDS103133540103133979-
GWHAAZE00000001CDS103131924103133404-
Transcript Sequence

Network for GWHGAAZE003737

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.24ABC_membrane411371.90E-10
PF00664.24ABC_membrane1402617.40E-14
PF00005.28ABC_tran3294783.50E-36
PF00664.24ABC_membrane6258831.00E-46
PF00005.28ABC_tran96211118.20E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05658ABCB1, CD243 ABC transporters map02010
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0042626molecular_functionATPase-coupled transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.143
SRR3591706second leaf0.369
SRR3591707mature leaf1.326
SRR3591708Shoot apex0.981
SRR3591709Stem1.079
SRR3591710White floral bud4.945
SRR3591711White flower4.370
SRR3591712Green floral bud2.753
SRR3591713Yellow flower5.721
SRP173429 SRR8316895Juvenile bud stage 0.932
SRR8316896Juvenile bud stage 1.750
SRR8316897Juvenile bud stage 0.563
SRR8316894Third green stage 1.185
SRR8316900Third green stage 3.084
SRR8316901Third green stage 3.747
SRR8316898Complete white stage 1.738
SRR8316899Complete white stage 1.012
SRR8316903Complete white stage 3.327
SRR8316902Silver flowering stage2.737
SRR8316904Silver flowering stage4.283
SRR8316905Silver flowering stage2.400
SRR8316906Gold flowering stage 7.316
SRR8316907Gold flowering stage 5.853
SRR8316908Gold flowering stage 7.667
SRP132670SRR6706286Control2.275
SRR6706287Light intensity 50%2.156
SRR6706288Light intensity 20%2.191
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.597
CNS0095593Slightly white alabastrum(diploid) 21.747
CNS0095594Slightly white alabastrum(diploid) 31.830
CNS0095595Whole white alabastrum(diploid) 23.883
CNS0095596Whole white alabastrum(diploid) 33.038
CNS0095597Whole white alabastrum(diploid) 43.206
CNS0095598Silvery flower (diploied) 13.821
CNS0095599Silvery flower (diploied) 25.141
CNS0095600Silvery flower (diploied) 38.082
CNS0095601Golden flower (diploid) 14.962
CNS0095602Golden flower (diploid) 27.713
CNS0095603Golden flower (diploid) 37.735
CNS0095604Slightly white alabastrum(tetraploid) 13.020
CNS0095605Slightly white alabastrum(tetraploid) 22.367
CNS0095606Slightly white alabastrum(tetraploid) 30.830
CNS0095607Whole white alabastrum(tetraploid) 12.267
CNS0095608Whole white alabastrum(tetraploid) 21.656
CNS0095609Whole white alabastrum(tetraploid) 31.335
CNS0095610Silvery flower (tetraploid) 12.521
CNS0095611Silvery flower (tetraploid) 23.319
CNS0095612Silvery flower (tetraploid) 32.634
CNS0095613Golden flower (tetraploid) 13.588
CNS0095614Golden flower (tetraploid) 23.226
CNS0095615Golden flower (tetraploid) 37.390
CRA001975CRR073297Stem 10.934
CRR073298Stem 21.470
CRR073299Stem 30.938
CRR073300Leaf 11.456
CRR073301Leaf 22.066
CRR073302Leaf 31.972
CRR073303Juvenile bud 10.686
CRR073304Juvenile bud 20.550
CRR073305Juvenile bud 30.806
CRR073306Third green 11.327
CRR073307Third green 21.610
CRR073308Third green 32.167
CRR073309Second white 10.728
CRR073310Second white 21.792
CRR073311Second white 33.130
CRR073312Silver flowering 11.605
CRR073313Silver flowering 20.853
CRR073314Silver flowering 31.159
CRR073315Gold flowering 10.546
CRR073316Gold flowering 21.322
CRR073317Gold flowering 30.990
CRR073318Tawny withering 11.422
CRR073319Tawny withering 21.364
CRR073320Tawny withering 31.837