Gene detail

Detail information of GWHGAAZE003717

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003634174.1	0	PREDICTED: two-component response regulator-like APRR5 isoform X1 [Vitis vinifera]
COG	YP_006528363.1	3E-15	response regulator receiver protein
Swissprot	tr\|Q689G6\|PRR95_ORYSJ	8E-98	Two-component response regulator-like PRR95
trEMBL	tr\|F6H771\|F6H771_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48094.1}
TAIR10	AT5G24470.1	1E-69	pseudo-response regulator 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102793839	102797043	+
GWHAAZE00000001	mRNA	102793839	102797043	+
GWHAAZE00000001	exon	102793839	102794061	+
GWHAAZE00000001	exon	102794448	102794609	+
GWHAAZE00000001	exon	102794702	102794832	+
GWHAAZE00000001	exon	102794947	102795099	+
GWHAAZE00000001	exon	102795290	102795467	+
GWHAAZE00000001	exon	102795560	102795899	+
GWHAAZE00000001	exon	102796042	102796801	+
GWHAAZE00000001	exon	102796912	102797043	+
GWHAAZE00000001	CDS	102793839	102794061	+
GWHAAZE00000001	CDS	102794448	102794609	+
GWHAAZE00000001	CDS	102794702	102794832	+
GWHAAZE00000001	CDS	102794947	102795099	+
GWHAAZE00000001	CDS	102795290	102795467	+
GWHAAZE00000001	CDS	102795560	102795899	+
GWHAAZE00000001	CDS	102796042	102796801	+
GWHAAZE00000001	CDS	102796912	102797043	+

Transcript Sequence
>GWHTAAZE003723 AGAGAAATGATGGATGAAGTGGCGGTGATTACTGAAAAAGGGATGGAGTTGGAAGTAAAAGAGACGGAGGAGGGTGGTTCAGCCATGAAGAAGGCCGTCGCGCAGGGGGTTGTGAGGTGGGAGAAATTTCTACCAGGAATGGTTCTCAGAGTGTTGCTCATTGAAGCTGACGATTCCACTCGCCAGATTATATCCGCTCTTCTTAGAAAATGCAGTTACAAAGTTACTGCTGTATCTGATGGTTTAAAGGCATGGGAAGTACTTAAAGAACTACCCCGCAAAATTGATCTCATATTGGCCGAAGTTGAGCTTCCATCCATCTCTGGATTTGCTCTTCTAACATCGATTGCAGAGCACGAAATCTTCAAAAACATCCCTGTTATAATGATGTCATCACTCGATTCGGTCAGCACAGTTTATAAATGCATGTTGAGTGGTGCTGTTGACTTTCTTGTGAAGCCTCTTCGGAAAAATGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGGAGACAAGCTAGAACTGGTGGCAAATGTAGTCCTCAGGATGAGAGTGATACACTGCAAAAACTGGAAGTCACAGCTGAAAACAATGCTCCTAGTAATACTCATTCAAGTGGTTACATGGCTTGTATTAATGGAGTTTACATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAACTACATTTGGAAGCTGAGGCAGCATATATAGAACACATGCAGGACCTTTCACAGGCCAAATGGAGCAAATCACTTCCGAGTGACCAAAAATTACAGAAGCAAGAAGGATATGTCAAGTCGAGTATGCAAGTGCTGATGCATGACAGTGAAGCTGGGGGTAAAAGATCAGCAGTGGCTGCCAGCAAGAATGCTAATAAAATAACTCAGGGAGAAGACATGGGTTCTGAAAGTCAATGGAAATGTTCAAACGTCATTACTGAAGATTGTGATAAAAATCATGTTACCTTTGATTCTTCTGGAGAAGCCATTGACCTAATTGGAGCATTCAATAATTACACTAAATGCAGCTACAGAGGCTCAGTTTTAAAGTATGACAGAACCAAGGTTGAATCTTCTCCACTATTGGATCTTTCCTTGAGAAGAACTCATCCTACTTGCTCTGTAAATCAAACTACAGACGAGAAGCATGGATTGAAGCACTCTGATTCCTCGGCCTTTTCACGGTATATTAACAAGACACATCCTCTACGCTCAACATCGGCTAGCATGTGTAATCAACATAAAGATCATGAAGCTAATTCTGATAAGTGGGTAACAAATCACGTTCTTGAGTATGACCCCGACACACATGGTCCTGCAGTTAATTCTCAGAAAGATATGTTCTCTCCAACAGCTGATCAACCAAGGCAAGGTGAAAATCAATTTCCTTGCCATCAAAAGAAATTATTTCCTTTTCCAATTCCAATGAGAGGTGTAAGATTTGAGAGCCTATCCACTGCTTATGGTTCCGTATTACCTCCAATAGATTGCACAAAATCAGGTTTATCACCAAAGCCGAGTCCAGGCTCATTTGGCCCTCAGCTATCCTCCTTTCAAGTAAATCCATTTTCCCCATCCAATCCCGACACTACAAACTGTCCACAGACGGATCACAAGATGGACCAAAATGACAACTCTGCCCCTGATCAGACGGATCACAAGATGCGGCATACATTGGAATCGTTGGAAAATCAAGGACATTTTTCTTTTTTCGCTGAACAGAGTGGGAGTAGTAGTTTCTGTAATGGTGCGTTAAGCCATCTTAACAGCATAGGTGGTGGAAGCAACAGCAATGTTGGTTTGATTCGAGTTGTGAGTGCTGTTCCACAGTGTGGAAATGAAGCTAATCATGTTCATGATGGAAACTCTCACCGATCTGTACACAGAGAAGTGGCTCTAAACAAATTCCGTATGAAGCGGAAAGATAGATGCTATGAGAAAAAGGTTCGATATGAAAGCAGAAAAAAGCTTGCGGAGCAGCGTCCCCGAGTGAAAGGACAGTTTATTCGTCATGTGCATAGTGAAGCTCCGTCTGTGGAAACTGATAGTTCAATGGCAGCAACAGCACATAGCTAG

Network for GWHGAAZE003717

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	51	162	5.80E-20
PF06203.15	CCT	630	671	6.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12130	PRR5	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.082
	SRR3591706	second leaf	16.838
	SRR3591707	mature leaf	47.082
	SRR3591708	Shoot apex	7.646
	SRR3591709	Stem	11.946
	SRR3591710	White floral bud	5.164
	SRR3591711	White flower	6.398
	SRR3591712	Green floral bud	6.760
	SRR3591713	Yellow flower	1.422
SRP173429	SRR8316895	Juvenile bud stage	7.706
	SRR8316896	Juvenile bud stage	9.300
	SRR8316897	Juvenile bud stage	3.911
	SRR8316894	Third green stage	3.323
	SRR8316900	Third green stage	8.514
	SRR8316901	Third green stage	7.200
	SRR8316898	Complete white stage	0.520
	SRR8316899	Complete white stage	7.604
	SRR8316903	Complete white stage	1.476
	SRR8316902	Silver flowering stage	0.115
	SRR8316904	Silver flowering stage	0.454
	SRR8316905	Silver flowering stage	0.222
	SRR8316906	Gold flowering stage	0.565
	SRR8316907	Gold flowering stage	0.346
	SRR8316908	Gold flowering stage	0.570
SRP132670	SRR6706286	Control	4.238
	SRR6706287	Light intensity 50%	5.463
	SRR6706288	Light intensity 20%	6.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.917
	CNS0095593	Slightly white alabastrum(diploid) 2	3.796
	CNS0095594	Slightly white alabastrum(diploid) 3	1.955
	CNS0095595	Whole white alabastrum(diploid) 2	3.991
	CNS0095596	Whole white alabastrum(diploid) 3	3.442
	CNS0095597	Whole white alabastrum(diploid) 4	4.666
	CNS0095598	Silvery flower (diploied) 1	9.830
	CNS0095599	Silvery flower (diploied) 2	7.589
	CNS0095600	Silvery flower (diploied) 3	4.471
	CNS0095601	Golden flower (diploid) 1	11.522
	CNS0095602	Golden flower (diploid) 2	7.445
	CNS0095603	Golden flower (diploid) 3	6.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.948
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.300
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.987
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.379
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.414
	CNS0095610	Silvery flower (tetraploid) 1	2.718
	CNS0095611	Silvery flower (tetraploid) 2	8.183
	CNS0095612	Silvery flower (tetraploid) 3	2.662
	CNS0095613	Golden flower (tetraploid) 1	1.649
	CNS0095614	Golden flower (tetraploid) 2	2.920
	CNS0095615	Golden flower (tetraploid) 3	0.214
CRA001975	CRR073297	Stem 1	2.773
	CRR073298	Stem 2	2.916
	CRR073299	Stem 3	2.228
	CRR073300	Leaf 1	2.307
	CRR073301	Leaf 2	1.717
	CRR073302	Leaf 3	2.232
	CRR073303	Juvenile bud 1	0.908
	CRR073304	Juvenile bud 2	0.378
	CRR073305	Juvenile bud 3	0.952
	CRR073306	Third green 1	0.029
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.072
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.077
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.002
	CRR073315	Gold flowering 1	3.480
	CRR073316	Gold flowering 2	3.892
	CRR073317	Gold flowering 3	2.153
	CRR073318	Tawny withering 1	1.899
	CRR073319	Tawny withering 2	1.997
	CRR073320	Tawny withering 3	1.940