Detail information of GWHGAAZE003700


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP27329.10hypothetical protein JCGZ_20830 [Jatropha curcas]
Swissprottr|Q9T091|VP26B_ARATH0Vacuolar protein sorting-associated protein 26B
trEMBLtr|A0A067K695|A0A067K695_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP27329.1}
TAIR10AT4G27690.12E-152vacuolar protein sorting 26B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene102492891102498665-
GWHAAZE00000001mRNA102492891102498665-
GWHAAZE00000001exon102492891102493069-
GWHAAZE00000001exon102493421102493596-
GWHAAZE00000001exon102493987102494090-
GWHAAZE00000001exon102495444102495510-
GWHAAZE00000001exon102496078102496189-
GWHAAZE00000001exon102496289102496333-
GWHAAZE00000001exon102497393102497465-
GWHAAZE00000001exon102497674102497748-
GWHAAZE00000001exon102498477102498551-
GWHAAZE00000001exon102498663102498665-
GWHAAZE00000001CDS102498663102498665-
GWHAAZE00000001CDS102498477102498551-
GWHAAZE00000001CDS102497674102497748-
GWHAAZE00000001CDS102497393102497465-
GWHAAZE00000001CDS102496289102496333-
GWHAAZE00000001CDS102496078102496189-
GWHAAZE00000001CDS102495444102495510-
GWHAAZE00000001CDS102493987102494090-
GWHAAZE00000001CDS102493421102493596-
GWHAAZE00000001CDS102492891102493069-
Transcript Sequence

Network for GWHGAAZE003700

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03643.16Vps2682842.60E-116
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18466VPS26 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.986
SRR3591706second leaf6.525
SRR3591707mature leaf4.187
SRR3591708Shoot apex14.717
SRR3591709Stem12.979
SRR3591710White floral bud3.926
SRR3591711White flower3.106
SRR3591712Green floral bud10.811
SRR3591713Yellow flower2.749
SRP173429 SRR8316895Juvenile bud stage 14.178
SRR8316896Juvenile bud stage 16.977
SRR8316897Juvenile bud stage 10.725
SRR8316894Third green stage 5.944
SRR8316900Third green stage 14.153
SRR8316901Third green stage 11.768
SRR8316898Complete white stage 2.094
SRR8316899Complete white stage 15.772
SRR8316903Complete white stage 3.652
SRR8316902Silver flowering stage0.693
SRR8316904Silver flowering stage1.941
SRR8316905Silver flowering stage0.707
SRR8316906Gold flowering stage 2.009
SRR8316907Gold flowering stage 1.611
SRR8316908Gold flowering stage 2.438
SRP132670SRR6706286Control11.170
SRR6706287Light intensity 50%10.812
SRR6706288Light intensity 20%13.689
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.725
CNS0095593Slightly white alabastrum(diploid) 218.390
CNS0095594Slightly white alabastrum(diploid) 315.996
CNS0095595Whole white alabastrum(diploid) 211.280
CNS0095596Whole white alabastrum(diploid) 39.500
CNS0095597Whole white alabastrum(diploid) 411.949
CNS0095598Silvery flower (diploied) 110.229
CNS0095599Silvery flower (diploied) 27.266
CNS0095600Silvery flower (diploied) 35.248
CNS0095601Golden flower (diploid) 110.267
CNS0095602Golden flower (diploid) 25.570
CNS0095603Golden flower (diploid) 35.941
CNS0095604Slightly white alabastrum(tetraploid) 112.327
CNS0095605Slightly white alabastrum(tetraploid) 210.634
CNS0095606Slightly white alabastrum(tetraploid) 313.053
CNS0095607Whole white alabastrum(tetraploid) 17.131
CNS0095608Whole white alabastrum(tetraploid) 27.970
CNS0095609Whole white alabastrum(tetraploid) 310.246
CNS0095610Silvery flower (tetraploid) 14.833
CNS0095611Silvery flower (tetraploid) 25.754
CNS0095612Silvery flower (tetraploid) 33.017
CNS0095613Golden flower (tetraploid) 11.217
CNS0095614Golden flower (tetraploid) 22.705
CNS0095615Golden flower (tetraploid) 30.582
CRA001975CRR073297Stem 116.817
CRR073298Stem 211.093
CRR073299Stem 312.928
CRR073300Leaf 114.994
CRR073301Leaf 216.409
CRR073302Leaf 313.687
CRR073303Juvenile bud 114.071
CRR073304Juvenile bud 28.315
CRR073305Juvenile bud 39.450
CRR073306Third green 11.635
CRR073307Third green 20.625
CRR073308Third green 31.029
CRR073309Second white 11.812
CRR073310Second white 23.390
CRR073311Second white 30.859
CRR073312Silver flowering 11.672
CRR073313Silver flowering 20.384
CRR073314Silver flowering 30.273
CRR073315Gold flowering 114.428
CRR073316Gold flowering 217.812
CRR073317Gold flowering 39.040
CRR073318Tawny withering 113.676
CRR073319Tawny withering 213.465
CRR073320Tawny withering 314.877