Gene detail

Detail information of GWHGAAZE003678

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009368656.1	0	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Pyrus x bretschneideri]
COG	YP_673731.1	1E-98	ATP-dependent protease ATP-binding subunit ClpX
trEMBL	tr\|B9I5C5\|B9I5C5_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE96644.2}
TAIR10	AT5G53350.1	6E-150	CLP protease regulatory subunit X

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102046678	102053856	-
GWHAAZE00000001	mRNA	102046678	102053856	-
GWHAAZE00000001	exon	102053330	102053856	-
GWHAAZE00000001	exon	102053161	102053248	-
GWHAAZE00000001	exon	102052768	102052826	-
GWHAAZE00000001	exon	102052399	102052444	-
GWHAAZE00000001	exon	102052073	102052266	-
GWHAAZE00000001	exon	102051891	102051991	-
GWHAAZE00000001	exon	102051180	102051264	-
GWHAAZE00000001	exon	102050702	102050783	-
GWHAAZE00000001	exon	102049566	102049640	-
GWHAAZE00000001	exon	102049393	102049470	-
GWHAAZE00000001	exon	102048608	102048664	-
GWHAAZE00000001	exon	102048434	102048504	-
GWHAAZE00000001	exon	102048242	102048341	-
GWHAAZE00000001	exon	102048051	102048155	-
GWHAAZE00000001	exon	102047683	102047745	-
GWHAAZE00000001	exon	102047442	102047564	-
GWHAAZE00000001	exon	102047108	102047266	-
GWHAAZE00000001	exon	102046678	102046957	-
GWHAAZE00000001	CDS	102053330	102053856	-
GWHAAZE00000001	CDS	102053161	102053248	-
GWHAAZE00000001	CDS	102052768	102052826	-
GWHAAZE00000001	CDS	102052399	102052444	-
GWHAAZE00000001	CDS	102052073	102052266	-
GWHAAZE00000001	CDS	102051891	102051991	-
GWHAAZE00000001	CDS	102051180	102051264	-
GWHAAZE00000001	CDS	102050702	102050783	-
GWHAAZE00000001	CDS	102049566	102049640	-
GWHAAZE00000001	CDS	102049393	102049470	-
GWHAAZE00000001	CDS	102048608	102048664	-
GWHAAZE00000001	CDS	102048434	102048504	-
GWHAAZE00000001	CDS	102048242	102048341	-
GWHAAZE00000001	CDS	102048051	102048155	-
GWHAAZE00000001	CDS	102047683	102047745	-
GWHAAZE00000001	CDS	102047442	102047564	-
GWHAAZE00000001	CDS	102047108	102047266	-
GWHAAZE00000001	CDS	102046883	102046957	-
GWHAAZE00000001	three_prime_UTR	102046678	102046882	-

Transcript Sequence
>GWHTAAZE003684 ATGGCTGCAGCAGCAGCACTAAGGTCTAAATCAACAAGAGGCACTGCTGCTTCCTTCACAGTCTCTCAGTTCAGATACTTCATACTCAACCACTCCTACCCTAGTCGGACCGAAAATATCCAAACCACTCCCAAATCCAAATTCGAGGACTTCTTCGCTAATACTCCCTACCATCTCATCTCATTCAAACCCGTATCACTTCGTGGCCAATTCGTAGATAGGTGTTACGAGTATCGCCGCAATAAGCTCTCGTCAGGGTTTACCAAGACTAATGATAATACAAAGTTAATTAATAATATGTCGGGTTCTTACGGGGACCCACCCGAGGTTTGGCAACCACCCGGTGATGGGATTGTGCTCCGGCCCGGTGTCAAGGTGGTTCAGATGAGAGATGGGGATGGTCCCTCCTCCACTGGTGGTTCCGGAGGTGGTGGGTTTGGTTCCAATTCCAAAGATGAGAATTGGGGAGGATCCAATTTGGGGATTAATTTTCCTACACCCAAGGAGATATGTAAAGGGCTTGATAAGTTTGTTTTCATTTGTAAAAGTGATGGATTTGGAATGCCTACTATTGTTGCAACATGCATGCTAGCTAACGTTAGAATAGGAATGGAAGTGCTTTCAGTGGCGGTTTATAATCACTATAAGAGGATTTCTATTGACACTTCTGAAAAGGAATGTAGGAGGGATGGAAATGAAACTCCTTGGGAGAAGGTTGAGCCACTTGGGGAAGGCCTTTTCCTTCTGATGGGCCAACTTCCTGGAAAGAATTTGGTTGAACTGGAGAAGAAGGCCCTCTTCATCCAGCTGTTTCCTGTCCTCTCTTCCAGAAGGACTATGAACTTTCGTTTCCTAACCTCCCTTAACAGTGTTGAAAGAATATCATTGGGTTCCAATACTAATGGTTTGCGCATGTCTACCGAAAATTCAAGCGATGATAAAGCAGATGTCCTAGATAACGATTTGGTGGAACTTGAGAAAAGTAACATTCTTCTAATGGGGCCTACAGGTTCAGCACAATCTATCTCCAACCTCTCCTTGTTCTTTAACGAACTTTGGAAAGTGGTTCTGAGTCTTGTTATTGAGTTCACTGAGCTAAGGTATAGGCACGTGACATCATGTTATTTGCAGGCTGGATATGTTGGTGAGGATGTGGAGTCCATTTTGTACAAGCTTCTTACGGTTGCTGACTATAATGTAGCAGCTGCCCAGCAGGGCATTGTGTATATCGATGAAGTTGACAAGATCACTAAAAAGGCTGAGAGCCTTAATATTAGCAGAGATGTCTCAGGGGAGGGTGTCCAGCAGGCATTACTGAAAATGCTGGAGGGGACAGTAGTGAATGTCCCCGAGAAGGGAGCTCGAAAGCACCCCAGAGGTGACAATATTCAGATCGACACCAAGGACATTCTCTTTATTTGTGGGGGTGCCTTTATAGACTTGGAGAAAACAATCTCAGAAAGGAGGCAGGACTCGTCAATTGGGTTTGGCGCACCTGTCCGTGCAAACATGAGGACCAGTGGAGTTACTCATGCTTCCATTACGTCGTCTTTATTGGAAACGGTCGAAAGCAGCGATTTGATTGCATATGGTTTGATACCCGAATTTGTTGGACGGTTTCCCATCCTTGTTAGTTTGTCTGCTCTCACTGAGGATCAACTCGTTCAGGTGCTAACAGAACCCAAAAATGCACTGGGGAAGCAGTACCAAAAGATGTTTCAAATGAATGGAGTAAAGCTGCATTTCGTGGAAAGTGCATTGAGATTGATTGCTAGGAAAGCAATAAGTAAGAACACCGGTGCTCGGGGTTTACGGGCCATATTGGAGAATACTTTGATGGATGCCATGTATGAGATTCCAGATGTGAGGACAGGCAATGACATAATAGATGGGGTGGTAGTTGACGAGGAGGCTGTTGGAGCGGAGGGGCGCGGGTGTGGAGCTAAGATCCTCTATGGTGAGGGTGCACTGGACAGCTTTCTTTCACAGCATAAATTAAAAGATTTAGATCAGAGACCGGCAGGGGGTTCAGATGGAGAACAAGCTCCTGATATGGAAGCGGAGCTTCCTTCCCTTGTTGCTTTGTAATTTAGTTTGTTCCTAGGTTTATTTCTGGTATCTCACCACTAATGTACAGTAGTAATATGTATATTTATATGAAAACATTCGATCAAATAATTTAAACATGTCATGCTACAGATGTACCTTTCTATTTATTCATCCAATCAATACGCCACAATGTTATATATGTATACATATATGTATTCTTGTCACATAAGGCCATCTCCAATTA

Network for GWHGAAZE003678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	326	542	6.30E-33
PF10431.10	ClpB_D2-small	549	619	6.90E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03544	clpX, CLPX	Cell cycle - Caulobacter	map04112

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005524	molecular_function	ATP binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.637
	SRR3591706	second leaf	11.906
	SRR3591707	mature leaf	16.656
	SRR3591708	Shoot apex	7.446
	SRR3591709	Stem	10.248
	SRR3591710	White floral bud	15.078
	SRR3591711	White flower	22.771
	SRR3591712	Green floral bud	10.503
	SRR3591713	Yellow flower	24.523
SRP173429	SRR8316895	Juvenile bud stage	7.037
	SRR8316896	Juvenile bud stage	10.827
	SRR8316897	Juvenile bud stage	3.609
	SRR8316894	Third green stage	5.215
	SRR8316900	Third green stage	12.168
	SRR8316901	Third green stage	11.859
	SRR8316898	Complete white stage	6.607
	SRR8316899	Complete white stage	16.927
	SRR8316903	Complete white stage	11.980
	SRR8316902	Silver flowering stage	10.251
	SRR8316904	Silver flowering stage	16.650
	SRR8316905	Silver flowering stage	8.952
	SRR8316906	Gold flowering stage	25.759
	SRR8316907	Gold flowering stage	23.337
	SRR8316908	Gold flowering stage	21.898
SRP132670	SRR6706286	Control	15.732
	SRR6706287	Light intensity 50%	15.961
	SRR6706288	Light intensity 20%	16.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.837
	CNS0095593	Slightly white alabastrum(diploid) 2	9.697
	CNS0095594	Slightly white alabastrum(diploid) 3	8.245
	CNS0095595	Whole white alabastrum(diploid) 2	7.978
	CNS0095596	Whole white alabastrum(diploid) 3	5.829
	CNS0095597	Whole white alabastrum(diploid) 4	7.772
	CNS0095598	Silvery flower (diploied) 1	13.698
	CNS0095599	Silvery flower (diploied) 2	12.156
	CNS0095600	Silvery flower (diploied) 3	22.884
	CNS0095601	Golden flower (diploid) 1	13.410
	CNS0095602	Golden flower (diploid) 2	18.614
	CNS0095603	Golden flower (diploid) 3	19.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.417
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.451
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.140
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.337
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.303
	CNS0095610	Silvery flower (tetraploid) 1	17.035
	CNS0095611	Silvery flower (tetraploid) 2	17.229
	CNS0095612	Silvery flower (tetraploid) 3	15.409
	CNS0095613	Golden flower (tetraploid) 1	13.061
	CNS0095614	Golden flower (tetraploid) 2	15.941
	CNS0095615	Golden flower (tetraploid) 3	13.860
CRA001975	CRR073297	Stem 1	13.292
	CRR073298	Stem 2	14.541
	CRR073299	Stem 3	12.124
	CRR073300	Leaf 1	15.976
	CRR073301	Leaf 2	14.560
	CRR073302	Leaf 3	11.478
	CRR073303	Juvenile bud 1	11.261
	CRR073304	Juvenile bud 2	11.340
	CRR073305	Juvenile bud 3	14.441
	CRR073306	Third green 1	4.965
	CRR073307	Third green 2	4.992
	CRR073308	Third green 3	6.535
	CRR073309	Second white 1	9.188
	CRR073310	Second white 2	11.599
	CRR073311	Second white 3	12.549
	CRR073312	Silver flowering 1	8.609
	CRR073313	Silver flowering 2	7.917
	CRR073314	Silver flowering 3	9.126
	CRR073315	Gold flowering 1	22.004
	CRR073316	Gold flowering 2	32.655
	CRR073317	Gold flowering 3	18.214
	CRR073318	Tawny withering 1	10.256
	CRR073319	Tawny withering 2	8.472
	CRR073320	Tawny withering 3	9.339