Gene detail

Detail information of GWHGAAZE003674

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011083961.1	0	PREDICTED: signal recognition particle receptor subunit alpha homolog [Sesamum indicum]
COG	NP_579495.1	9E-66	signal recognition particle receptor
Swissprot	tr\|P49972\|SR542_SOLLC	1E-32	Signal recognition particle 54 kDa protein 2
trEMBL	tr\|A0A022R6M2\|A0A022R6M2_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU35333.1}
TAIR10	AT4G30600.1	0	signal recognition particle receptor alpha subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101936606	101940301	+
GWHAAZE00000001	mRNA	101936606	101940301	+
GWHAAZE00000001	exon	101936606	101937591	+
GWHAAZE00000001	exon	101938193	101938277	+
GWHAAZE00000001	exon	101938467	101938562	+
GWHAAZE00000001	exon	101938678	101938830	+
GWHAAZE00000001	exon	101938927	101939034	+
GWHAAZE00000001	exon	101939162	101939281	+
GWHAAZE00000001	exon	101939744	101939869	+
GWHAAZE00000001	exon	101939978	101940061	+
GWHAAZE00000001	exon	101940176	101940301	+
GWHAAZE00000001	CDS	101936606	101937591	+
GWHAAZE00000001	CDS	101938193	101938277	+
GWHAAZE00000001	CDS	101938467	101938562	+
GWHAAZE00000001	CDS	101938678	101938830	+
GWHAAZE00000001	CDS	101938927	101939034	+
GWHAAZE00000001	CDS	101939162	101939281	+
GWHAAZE00000001	CDS	101939744	101939869	+
GWHAAZE00000001	CDS	101939978	101940061	+
GWHAAZE00000001	CDS	101940176	101940301	+

Transcript Sequence
>GWHTAAZE003680 ATGTTAGAGCAGTTACTGATTTTCACTAGAGGAGGATTGATCCTCTGGACATGTAAAGAGCTCGGAAATGCTATTAGAGGATCGCCCATCGACACCTTGATCAGGTCCTGCCTTCTGGAGGAAAGATCTGGTGCTGCTTCATACAATTATGAGGCACCTGGTGCTGCATACACGCTCAAGTGGACATTCCACAACGAACTTGGCCTTGTCTTTGTTGCCATTTATCAACGAATTCTCCATCTTTTATATGTGGACGATCTGCTTGCTATGGTGAAGCGGGAGTTCTCAGAGATTTATGATCCAAAACGGACGGTGTACAATGATTTTGATGACATATTTAGGCAGCTTAGAAAGGAGGCTGAGGCTCGTGCAGAGGAAATGAAGAAATCAAAGCAGGTCAGTAAGCCTGTGAATAACAATTTGGGTAAAAAGCAAGGGCATGTGCAAAAGTTGGGTGCTGAAGGAGGTAGCAAAAAAAGTAGCAGCGGTGAATCTGGAAATGGCGGCGGTGGTGGTGTTGATGGTGACAAATTAAAAAGTCGTAACTTTGAAAATGGACATTCCAATGGTAATCATATTGGAAACAGGGAATTGCCCGCAAGGGGTAATGTAAATGGTAAAGAGAATGGAAGTGCCAACACTGGGGCTTTTGATGTAAATAAGCTACAAAAGCTTAGAGCTAAAGGTGCGAAGAAAACTGATACTGTTGTTAACAAGAGTTCCAAGGAGGAACCAAAGAAAAAGATAACAAAGAAGAACAGAGTTTGGGATGATTCACCTCGAGAGTCAAAATTGGACTTTACAGATCCAGTGAGTGAGAATGGGGAAGAGAATATGGTGGTGGTTGCAGCGGATCAAGGTGAGAGTATGATGGACAGAGAGGAGATCGTCAGCAGTGAAAGTGAAAGTGAAGAGGATGAGGAAGCAGAGAAGGATAGGAAGGTAGATGCTAAGAAGAAAGGATGGTTTTCATCCATGTTCCAGAGTATTGCCGGAAAGGCAAATTTGGAGAAGGCAGATCTAGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACAAAGAATGTGGCTGAAGAAATAGCTGAAAAACTTTGTGAATCAGTTGCAGCAAGTCTTGAGGGTAAAAAACTTGGCTCATTCACAAGGATATCATCAACAGTGCAGGCAGCAATGGAAGATGCTCTTGTACGCATCTTAACTCCCAGACGCTCCATTGACATTATGAGGGATGTTCATGCCGCCAAGGAACAAAGAAAGCCATATGTTGTGGTTTTTGTTGGAGTTAATGGTGTTGGAAAATCCACCAATCTTGCCAAGGTAGCTTACTGGCTTCAACAGCACAATGTCAATGTAATGATGGCTGCATGTGATACATTCCGTTCAGGAGCTGTTGAGCAGCTGCGTACTCACGCACGTAGACTCCAGATTCCTATATTTGAGAAGGGTTATGAGAAAGATCCTGCTATAGTAGCAAAGGAGGCAATACAAGAGGCGTCTCGAAATGGTTCGGATGTGGTTCTTGTTGATACAGCAGGTCGTATGCAGGATAATGAGCCACTAATGCGAGCTCTGTCGAAGCTCATCTATGTCAACAGCCCAGATCTGGTCCTCTTTGTTGGAGAGGCACTGGTTGGGAATGATGCTGTGGATCAACTATCAAAATTCAATCAGAAACTAGCTGACTTATCACCCTCTCCTAGCCCTAGGTTGATCGATGGAATCCTGCTTACAAAGTTCGATACCATTGATGATAAGGTTGGAGCAGCACTGTCAATGGTATACATATCGGGAGCGCCTGTGATGTTTGTTGGATGTGGTCAGTCGTACACGGACTTGAAGAAGCTCAACGTCAAGTCCATTGTCAAGACCCTCCTTAAATGA

Network for GWHGAAZE003674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04086.14	SRP-alpha_N	28	306	1.30E-72
PF02881.20	SRP54_N	323	391	8.10E-08
PF00448.23	SRP54	422	626	1.90E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13431	SRPR	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0006886	biological_process	intracellular protein transport
GO:0005785	cellular_component	signal recognition particle receptor complex
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity
GO:0005047	molecular_function	signal recognition particle binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	160.713
	SRR3591706	second leaf	49.803
	SRR3591707	mature leaf	51.289
	SRR3591708	Shoot apex	69.725
	SRR3591709	Stem	173.935
	SRR3591710	White floral bud	156.505
	SRR3591711	White flower	165.021
	SRR3591712	Green floral bud	123.245
	SRR3591713	Yellow flower	180.516
SRP173429	SRR8316895	Juvenile bud stage	58.843
	SRR8316896	Juvenile bud stage	71.319
	SRR8316897	Juvenile bud stage	2.458
	SRR8316894	Third green stage	26.760
	SRR8316900	Third green stage	61.277
	SRR8316901	Third green stage	78.168
	SRR8316898	Complete white stage	32.774
	SRR8316899	Complete white stage	97.765
	SRR8316903	Complete white stage	64.644
	SRR8316902	Silver flowering stage	39.760
	SRR8316904	Silver flowering stage	57.538
	SRR8316905	Silver flowering stage	28.209
	SRR8316906	Gold flowering stage	88.079
	SRR8316907	Gold flowering stage	87.365
	SRR8316908	Gold flowering stage	36.288
SRP132670	SRR6706286	Control	65.695
	SRR6706287	Light intensity 50%	71.645
	SRR6706288	Light intensity 20%	72.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.685
	CNS0095593	Slightly white alabastrum(diploid) 2	69.776
	CNS0095594	Slightly white alabastrum(diploid) 3	64.348
	CNS0095595	Whole white alabastrum(diploid) 2	63.114
	CNS0095596	Whole white alabastrum(diploid) 3	45.505
	CNS0095597	Whole white alabastrum(diploid) 4	55.389
	CNS0095598	Silvery flower (diploied) 1	92.484
	CNS0095599	Silvery flower (diploied) 2	76.857
	CNS0095600	Silvery flower (diploied) 3	80.890
	CNS0095601	Golden flower (diploid) 1	67.539
	CNS0095602	Golden flower (diploid) 2	85.552
	CNS0095603	Golden flower (diploid) 3	85.559
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.668
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.349
	CNS0095610	Silvery flower (tetraploid) 1	13.083
	CNS0095611	Silvery flower (tetraploid) 2	11.785
	CNS0095612	Silvery flower (tetraploid) 3	12.207
	CNS0095613	Golden flower (tetraploid) 1	13.047
	CNS0095614	Golden flower (tetraploid) 2	13.911
	CNS0095615	Golden flower (tetraploid) 3	17.814
CRA001975	CRR073297	Stem 1	83.111
	CRR073298	Stem 2	75.561
	CRR073299	Stem 3	72.565
	CRR073300	Leaf 1	95.991
	CRR073301	Leaf 2	94.779
	CRR073302	Leaf 3	78.555
	CRR073303	Juvenile bud 1	88.640
	CRR073304	Juvenile bud 2	85.023
	CRR073305	Juvenile bud 3	103.715
	CRR073306	Third green 1	87.185
	CRR073307	Third green 2	88.916
	CRR073308	Third green 3	93.843
	CRR073309	Second white 1	88.967
	CRR073310	Second white 2	89.310
	CRR073311	Second white 3	98.872
	CRR073312	Silver flowering 1	109.472
	CRR073313	Silver flowering 2	125.507
	CRR073314	Silver flowering 3	105.206
	CRR073315	Gold flowering 1	30.573
	CRR073316	Gold flowering 2	55.309
	CRR073317	Gold flowering 3	35.499
	CRR073318	Tawny withering 1	85.948
	CRR073319	Tawny withering 2	133.027
	CRR073320	Tawny withering 3	81.293