Detail information of GWHGAAZE003662


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004234968.15.22158E-34PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Solanum lycopersicum]
trEMBLtr|K4BIA1|K4BIA1_SOLLC2E-34Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g083250.2.1}
TAIR10AT5G53350.13E-17CLP protease regulatory subunit X

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene101795156101797347-
GWHAAZE00000001mRNA101795156101797347-
GWHAAZE00000001exon101795156101795184-
GWHAAZE00000001exon101795383101795483-
GWHAAZE00000001exon101795565101795758-
GWHAAZE00000001exon101795891101795936-
GWHAAZE00000001exon101796260101796318-
GWHAAZE00000001exon101796653101796740-
GWHAAZE00000001exon101796818101797347-
GWHAAZE00000001CDS101796818101797347-
GWHAAZE00000001CDS101796653101796740-
GWHAAZE00000001CDS101796260101796318-
GWHAAZE00000001CDS101795891101795936-
GWHAAZE00000001CDS101795565101795758-
GWHAAZE00000001CDS101795383101795483-
GWHAAZE00000001CDS101795156101795184-
Transcript Sequence

Network for GWHGAAZE003662

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03544clpX, CLPX Cell cycle - Caulobacter map04112

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.734
SRR3591706second leaf9.632
SRR3591707mature leaf15.056
SRR3591708Shoot apex6.673
SRR3591709Stem9.707
SRR3591710White floral bud12.497
SRR3591711White flower21.370
SRR3591712Green floral bud8.846
SRR3591713Yellow flower22.525
SRP173429 SRR8316895Juvenile bud stage 2.380
SRR8316896Juvenile bud stage 4.604
SRR8316897Juvenile bud stage 1.774
SRR8316894Third green stage 2.367
SRR8316900Third green stage 6.334
SRR8316901Third green stage 5.549
SRR8316898Complete white stage 3.114
SRR8316899Complete white stage 9.352
SRR8316903Complete white stage 4.273
SRR8316902Silver flowering stage5.899
SRR8316904Silver flowering stage6.420
SRR8316905Silver flowering stage2.599
SRR8316906Gold flowering stage 11.100
SRR8316907Gold flowering stage 8.239
SRR8316908Gold flowering stage 9.319
SRP132670SRR6706286Control5.374
SRR6706287Light intensity 50%5.516
SRR6706288Light intensity 20%6.100
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.431
CNS0095593Slightly white alabastrum(diploid) 21.197
CNS0095594Slightly white alabastrum(diploid) 31.184
CNS0095595Whole white alabastrum(diploid) 22.212
CNS0095596Whole white alabastrum(diploid) 31.770
CNS0095597Whole white alabastrum(diploid) 42.155
CNS0095598Silvery flower (diploied) 14.086
CNS0095599Silvery flower (diploied) 23.796
CNS0095600Silvery flower (diploied) 311.050
CNS0095601Golden flower (diploid) 13.955
CNS0095602Golden flower (diploid) 210.414
CNS0095603Golden flower (diploid) 310.208
CNS0095604Slightly white alabastrum(tetraploid) 13.697
CNS0095605Slightly white alabastrum(tetraploid) 23.132
CNS0095606Slightly white alabastrum(tetraploid) 37.825
CNS0095607Whole white alabastrum(tetraploid) 11.867
CNS0095608Whole white alabastrum(tetraploid) 21.799
CNS0095609Whole white alabastrum(tetraploid) 35.654
CNS0095610Silvery flower (tetraploid) 120.857
CNS0095611Silvery flower (tetraploid) 217.829
CNS0095612Silvery flower (tetraploid) 313.328
CNS0095613Golden flower (tetraploid) 110.845
CNS0095614Golden flower (tetraploid) 216.915
CNS0095615Golden flower (tetraploid) 314.174
CRA001975CRR073297Stem 14.737
CRR073298Stem 24.915
CRR073299Stem 36.113
CRR073300Leaf 16.875
CRR073301Leaf 25.470
CRR073302Leaf 34.161
CRR073303Juvenile bud 14.929
CRR073304Juvenile bud 26.159
CRR073305Juvenile bud 37.738
CRR073306Third green 11.979
CRR073307Third green 21.959
CRR073308Third green 32.593
CRR073309Second white 14.264
CRR073310Second white 25.535
CRR073311Second white 35.844
CRR073312Silver flowering 15.372
CRR073313Silver flowering 23.385
CRR073314Silver flowering 34.128
CRR073315Gold flowering 19.890
CRR073316Gold flowering 216.010
CRR073317Gold flowering 311.669
CRR073318Tawny withering 14.103
CRR073319Tawny withering 22.716
CRR073320Tawny withering 33.084