Gene detail

Detail information of GWHGAAZE003660

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004307988.1	0	PREDICTED: E3 ubiquitin-protein ligase SINAT4-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q84JL3\|SINA3_ARATH	0	E3 ubiquitin-protein ligase SINAT3
trEMBL	tr\|M1AIM2\|M1AIM2_SOLTU	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}
TAIR10	AT3G61790.1	2E-152	Protein with RING/U-box and TRAF-like domains

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101786286	101788178	-
GWHAAZE00000001	mRNA	101786286	101788178	-
GWHAAZE00000001	exon	101786286	101786645	-
GWHAAZE00000001	exon	101786762	101787148	-
GWHAAZE00000001	exon	101787903	101788178	-
GWHAAZE00000001	CDS	101787903	101788178	-
GWHAAZE00000001	CDS	101786762	101787148	-
GWHAAZE00000001	CDS	101786286	101786645	-

Transcript Sequence
>GWHTAAZE003666 ATGATGGATTTGGATAATATAGAGTGCGTCTCCTCTACGGATGGCATAGAAGATGAAGAAGAGATCCACACTCATCCTCGTAATAATAATAATAATAATAATAATAATAATAATAATCAAATTCATCATCATTATCAATTTTCCTCAAAGCCTTCTCCTCCTCCTCCTCACAACAACAAGACTATGATAATCCCAGGAATTACGCCAGCGACCAGCGTCCACGAACTCCTAGAGTGCCCCGTTTGCACCAATTCCATGTACCCACCTATCCATCAGTGCCACAATGGACACACACTGTGTTCCACCTGCAAGACACGGGTGCACAACCGTTGTCCTACTTGTAGACAAGAACTTGGAGACATTAGGTGCTTAGCTCTGGAGAAGATAGCAGAGTCGCTTGAACTCCCATGCAAGTATTATACATTGGGATGCTTGGAGATATTTCCATATTACAGCAAACTCAAGCACGAAGCAGTTTGCAACTTTAGGCCGTTCAGTTGCCCCTATGCTGGATCAGAGTGCTCTGTTACAGGAGATATACCATATCTGGTTTCGCATCTGAGAGATGACCACAAAGTAGACATGCACGCGGGATGTACATTCAACCATCGATATGTAAAATCAAATCCTCGTGAAGTTGAAAATGCCACCTGGATGCTAACTGTCTTCCATTGTTTTGGTCAGTATTTCTGCCTTCACTTTGAAGCCTTCCAGCTAGGCATGTCCCCAGTATACATGGCATTTCTACGTTTCATGGGAGACGAGGCAGACGCACGCAGTTACAACTACAGCTTAGAGGTAGGAGCAAATGGGAGAAAGCTCATATGGGAGGGCACCCCACGAAGTATAAGAGATAGCCACAGGAAGGTGAGGGATAGCCATGATGGCCTCATTATACAAAGGAACATGGCACTTTTCTTCTCTGGAGGGGATAGGAAAGAGTTGAAGCTTAGGGTTACAGGAAGAATATGGAAGGAAAGCCAGGATGCTACTGGGGTGTGTATACCCAACCTTTATAGCTGA

Network for GWHGAAZE003660

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03145.17	Sina	121	320	1.60E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04506	SIAH1	Ubiquitin mediated proteolysis	map04120
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0007275	biological_process	multicellular organism development
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.201
	SRR3591706	second leaf	2.504
	SRR3591707	mature leaf	3.593
	SRR3591708	Shoot apex	2.849
	SRR3591709	Stem	25.243
	SRR3591710	White floral bud	10.162
	SRR3591711	White flower	7.104
	SRR3591712	Green floral bud	8.007
	SRR3591713	Yellow flower	5.355
SRP173429	SRR8316895	Juvenile bud stage	4.648
	SRR8316896	Juvenile bud stage	4.994
	SRR8316897	Juvenile bud stage	1.752
	SRR8316894	Third green stage	1.863
	SRR8316900	Third green stage	4.755
	SRR8316901	Third green stage	5.349
	SRR8316898	Complete white stage	1.728
	SRR8316899	Complete white stage	2.568
	SRR8316903	Complete white stage	1.613
	SRR8316902	Silver flowering stage	1.651
	SRR8316904	Silver flowering stage	1.879
	SRR8316905	Silver flowering stage	1.345
	SRR8316906	Gold flowering stage	4.425
	SRR8316907	Gold flowering stage	4.260
	SRR8316908	Gold flowering stage	5.728
SRP132670	SRR6706286	Control	6.045
	SRR6706287	Light intensity 50%	5.362
	SRR6706288	Light intensity 20%	5.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.356
	CNS0095593	Slightly white alabastrum(diploid) 2	3.507
	CNS0095594	Slightly white alabastrum(diploid) 3	7.017
	CNS0095595	Whole white alabastrum(diploid) 2	14.141
	CNS0095596	Whole white alabastrum(diploid) 3	13.057
	CNS0095597	Whole white alabastrum(diploid) 4	18.802
	CNS0095598	Silvery flower (diploied) 1	5.738
	CNS0095599	Silvery flower (diploied) 2	6.749
	CNS0095600	Silvery flower (diploied) 3	6.811
	CNS0095601	Golden flower (diploid) 1	6.580
	CNS0095602	Golden flower (diploid) 2	7.868
	CNS0095603	Golden flower (diploid) 3	8.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.807
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.384
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.997
	CNS0095610	Silvery flower (tetraploid) 1	10.596
	CNS0095611	Silvery flower (tetraploid) 2	10.126
	CNS0095612	Silvery flower (tetraploid) 3	9.026
	CNS0095613	Golden flower (tetraploid) 1	18.683
	CNS0095614	Golden flower (tetraploid) 2	14.127
	CNS0095615	Golden flower (tetraploid) 3	24.003
CRA001975	CRR073297	Stem 1	7.521
	CRR073298	Stem 2	5.569
	CRR073299	Stem 3	9.897
	CRR073300	Leaf 1	5.495
	CRR073301	Leaf 2	5.690
	CRR073302	Leaf 3	1.660
	CRR073303	Juvenile bud 1	5.806
	CRR073304	Juvenile bud 2	4.939
	CRR073305	Juvenile bud 3	2.320
	CRR073306	Third green 1	3.382
	CRR073307	Third green 2	5.862
	CRR073308	Third green 3	5.121
	CRR073309	Second white 1	2.247
	CRR073310	Second white 2	4.648
	CRR073311	Second white 3	3.121
	CRR073312	Silver flowering 1	5.531
	CRR073313	Silver flowering 2	3.349
	CRR073314	Silver flowering 3	3.516
	CRR073315	Gold flowering 1	6.713
	CRR073316	Gold flowering 2	4.832
	CRR073317	Gold flowering 3	4.681
	CRR073318	Tawny withering 1	12.991
	CRR073319	Tawny withering 2	10.882
	CRR073320	Tawny withering 3	14.713