Detail information of GWHGAAZE003646


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010662974.13.9135E-110PREDICTED: zinc finger protein CONSTANS-LIKE 1 isoform X2 [Vitis vinifera]
Swissprottr|Q9FHH8|COL5_ARATH0.000000006Zinc finger protein CONSTANS-LIKE 5
trEMBLtr|E0CVH7|E0CVH7_VITVI9E-110Putative uncharacterized protein {ECO:0000313|EMBL:CBI23138.3}
TAIR10AT5G53420.13E-55CCT motif family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene101560141101562750-
GWHAAZE00000001mRNA101560141101562750-
GWHAAZE00000001exon101560141101560230-
GWHAAZE00000001exon101560910101561056-
GWHAAZE00000001exon101562044101562529-
GWHAAZE00000001exon101562634101562641-
GWHAAZE00000001exon101562714101562750-
GWHAAZE00000001CDS101562714101562750-
GWHAAZE00000001CDS101562634101562641-
GWHAAZE00000001CDS101562044101562529-
GWHAAZE00000001CDS101560910101561056-
GWHAAZE00000001CDS101560141101560230-
Transcript Sequence

Network for GWHGAAZE003646

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06203.15CCT2052479.30E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.523
SRR3591706second leaf2.933
SRR3591707mature leaf13.811
SRR3591708Shoot apex4.211
SRR3591709Stem29.171
SRR3591710White floral bud10.102
SRR3591711White flower16.020
SRR3591712Green floral bud6.153
SRR3591713Yellow flower3.195
SRP173429 SRR8316895Juvenile bud stage 6.565
SRR8316896Juvenile bud stage 9.195
SRR8316897Juvenile bud stage 1.519
SRR8316894Third green stage 3.262
SRR8316900Third green stage 8.164
SRR8316901Third green stage 8.778
SRR8316898Complete white stage 7.594
SRR8316899Complete white stage 19.641
SRR8316903Complete white stage 12.155
SRR8316902Silver flowering stage21.958
SRR8316904Silver flowering stage7.421
SRR8316905Silver flowering stage2.149
SRR8316906Gold flowering stage 11.117
SRR8316907Gold flowering stage 13.622
SRR8316908Gold flowering stage 7.578
SRP132670SRR6706286Control16.006
SRR6706287Light intensity 50%12.483
SRR6706288Light intensity 20%14.558
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.913
CNS0095593Slightly white alabastrum(diploid) 27.940
CNS0095594Slightly white alabastrum(diploid) 310.586
CNS0095595Whole white alabastrum(diploid) 25.678
CNS0095596Whole white alabastrum(diploid) 37.114
CNS0095597Whole white alabastrum(diploid) 48.795
CNS0095598Silvery flower (diploied) 18.355
CNS0095599Silvery flower (diploied) 26.401
CNS0095600Silvery flower (diploied) 311.964
CNS0095601Golden flower (diploid) 17.503
CNS0095602Golden flower (diploid) 25.016
CNS0095603Golden flower (diploid) 36.334
CNS0095604Slightly white alabastrum(tetraploid) 15.981
CNS0095605Slightly white alabastrum(tetraploid) 26.094
CNS0095606Slightly white alabastrum(tetraploid) 310.213
CNS0095607Whole white alabastrum(tetraploid) 15.707
CNS0095608Whole white alabastrum(tetraploid) 23.715
CNS0095609Whole white alabastrum(tetraploid) 36.357
CNS0095610Silvery flower (tetraploid) 110.700
CNS0095611Silvery flower (tetraploid) 23.322
CNS0095612Silvery flower (tetraploid) 33.989
CNS0095613Golden flower (tetraploid) 11.355
CNS0095614Golden flower (tetraploid) 22.773
CNS0095615Golden flower (tetraploid) 30.665
CRA001975CRR073297Stem 110.207
CRR073298Stem 28.473
CRR073299Stem 39.865
CRR073300Leaf 17.984
CRR073301Leaf 210.472
CRR073302Leaf 313.192
CRR073303Juvenile bud 113.372
CRR073304Juvenile bud 211.907
CRR073305Juvenile bud 315.262
CRR073306Third green 13.200
CRR073307Third green 28.697
CRR073308Third green 36.026
CRR073309Second white 14.818
CRR073310Second white 24.915
CRR073311Second white 32.914
CRR073312Silver flowering 13.047
CRR073313Silver flowering 21.663
CRR073314Silver flowering 31.125
CRR073315Gold flowering 150.180
CRR073316Gold flowering 264.812
CRR073317Gold flowering 317.433
CRR073318Tawny withering 113.948
CRR073319Tawny withering 215.172
CRR073320Tawny withering 317.925