Gene detail

Detail information of GWHGAAZE003628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009791967.1	2.40333E-91	PREDICTED: ethylene-responsive transcription factor CRF4-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SUE3\|CRF4_ARATH	7E-55	Ethylene-responsive transcription factor CRF4
trEMBL	tr\|A5B445\|A5B445_VITVI	1E-91	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74147.1}
TAIR10	AT4G27950.1	4E-45	cytokinin response factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101264264	101265316	+
GWHAAZE00000001	mRNA	101264264	101265316	+
GWHAAZE00000001	exon	101264264	101265316	+
GWHAAZE00000001	CDS	101264264	101265316	+

Transcript Sequence
>GWHTAAZE003634 ATGAGGCCTAAAAAATTTTCCGACTCCAACTCCGGCAAAGCCAGAGTTGTACGGATATCAGTTACCGATCCTGATGCTACTGACTCATCCAGCGGCGAAGAAGACGAGCTATTCGGTCGACGGCGTGTGAAGAGATATATTAATGAGGTTAATATTAAAACTGCTACAACCAGTACTGTTGCTAGTAGCAAAAAGGCGGTGGTTAACGGCGAAGCGCAAAAGGCTAAGAGTAAAGCAACGAAGACTATTCCGACAGGTAATGTGAGGAAGTTTCGGGGCGTAAGGCAAAGGCCGTGGGGAAAATGGGCGGCGGAGATCAGAGATCCGGCGAGACGTGTACGGCTCTGGTTGGGAACTTATGATACTGCAGAGGAGGCTGCTATGGTTTACGATAACGCGGCGATTAAGCTCCGAGGACCGGATGCTTTGACGAACTTCGTCAATCCGCCGCCCAAGGTGAAGCCGGAAATCAATCTAACGTCAGTTTCCGGCTACGATTCCGGTGAGGAGTCGCACAATCTGTGCTCTCCTACTTCGGTTCTCCGTTTTCAGAGCACGTATTCCAATGACCAATCCGAACAGCAGAGCCGGTCTGATCCGGTTCACGAGACAACTGAAGAATGTCAGTCAGTTAATGAATCGGTTCAGTTAACACAGGAGTTTCAAACGGAACCGGTTCAACAAGTTGAAAAGTTTGAAAACTCTGAACCGATTGAGGAAGATTTTCAAGTGTCGGATTACTTGTGTGACGATTATTTGGCAGCGGATATCTCGTTATTAGATAATGATAGTAATAATCTGTTGGATTTTCATTCTCCTGAACCGGTAAAGTTTGAGTTTAATGAAGACCCGGTAAATTTCTCCAATAATTTGTTTGGTGACCATTTCTGGTTACCGTTCGATGACGCTCCATTATTTGACGATGGCGAGTTATGGATGGACGATTGGAGAATATGCAACGAAGTGGGAACATCTTGTATGTTGGAAGTCGATGATTACTTTCAAGATGTGCCGGGTGAATTTTTTAGTTCTGATGTTTTGATGACGAGTTAA

Network for GWHGAAZE003628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	90	139	6.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.747
	SRR3591706	second leaf	1.107
	SRR3591707	mature leaf	0.890
	SRR3591708	Shoot apex	2.351
	SRR3591709	Stem	1.616
	SRR3591710	White floral bud	0.904
	SRR3591711	White flower	3.276
	SRR3591712	Green floral bud	0.857
	SRR3591713	Yellow flower	1.402
SRP173429	SRR8316895	Juvenile bud stage	2.753
	SRR8316896	Juvenile bud stage	1.458
	SRR8316897	Juvenile bud stage	2.087
	SRR8316894	Third green stage	0.974
	SRR8316900	Third green stage	0.717
	SRR8316901	Third green stage	0.503
	SRR8316898	Complete white stage	0.303
	SRR8316899	Complete white stage	3.047
	SRR8316903	Complete white stage	0.203
	SRR8316902	Silver flowering stage	0.337
	SRR8316904	Silver flowering stage	0.448
	SRR8316905	Silver flowering stage	0.047
	SRR8316906	Gold flowering stage	1.985
	SRR8316907	Gold flowering stage	0.389
	SRR8316908	Gold flowering stage	1.868
SRP132670	SRR6706286	Control	1.605
	SRR6706287	Light intensity 50%	1.331
	SRR6706288	Light intensity 20%	1.626
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.359
	CNS0095593	Slightly white alabastrum(diploid) 2	4.312
	CNS0095594	Slightly white alabastrum(diploid) 3	5.740
	CNS0095595	Whole white alabastrum(diploid) 2	2.849
	CNS0095596	Whole white alabastrum(diploid) 3	0.498
	CNS0095597	Whole white alabastrum(diploid) 4	3.072
	CNS0095598	Silvery flower (diploied) 1	4.705
	CNS0095599	Silvery flower (diploied) 2	9.060
	CNS0095600	Silvery flower (diploied) 3	4.976
	CNS0095601	Golden flower (diploid) 1	11.126
	CNS0095602	Golden flower (diploid) 2	6.999
	CNS0095603	Golden flower (diploid) 3	8.291
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.569
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.296
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.164
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.210
	CNS0095610	Silvery flower (tetraploid) 1	0.620
	CNS0095611	Silvery flower (tetraploid) 2	0.278
	CNS0095612	Silvery flower (tetraploid) 3	0.231
	CNS0095613	Golden flower (tetraploid) 1	0.155
	CNS0095614	Golden flower (tetraploid) 2	0.748
	CNS0095615	Golden flower (tetraploid) 3	0.147
CRA001975	CRR073297	Stem 1	2.354
	CRR073298	Stem 2	1.318
	CRR073299	Stem 3	1.726
	CRR073300	Leaf 1	0.502
	CRR073301	Leaf 2	1.117
	CRR073302	Leaf 3	1.296
	CRR073303	Juvenile bud 1	2.949
	CRR073304	Juvenile bud 2	1.229
	CRR073305	Juvenile bud 3	1.054
	CRR073306	Third green 1	0.192
	CRR073307	Third green 2	0.321
	CRR073308	Third green 3	0.718
	CRR073309	Second white 1	0.187
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.152
	CRR073312	Silver flowering 1	2.067
	CRR073313	Silver flowering 2	0.431
	CRR073314	Silver flowering 3	0.143
	CRR073315	Gold flowering 1	1.389
	CRR073316	Gold flowering 2	6.281
	CRR073317	Gold flowering 3	5.888
	CRR073318	Tawny withering 1	3.620
	CRR073319	Tawny withering 2	15.796
	CRR073320	Tawny withering 3	3.515