Gene detail

Detail information of GWHGAAZE003626

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05105.1	0	unnamed protein product [Coffea canephora]
COG	YP_004579826.1	2E-18	hypothetical protein
Swissprot	tr\|Q9SUQ3\|Y4374_ARATH	0	Probable inactive receptor kinase At4g23740 (Precursor)
trEMBL	tr\|A0A068U967\|A0A068U967_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05105.1}
TAIR10	AT4G23740.1	5E-173	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101216975	101218999	+
GWHAAZE00000001	mRNA	101216975	101218999	+
GWHAAZE00000001	exon	101216975	101218211	+
GWHAAZE00000001	exon	101218284	101218999	+
GWHAAZE00000001	CDS	101216975	101218211	+
GWHAAZE00000001	CDS	101218284	101218951	+
GWHAAZE00000001	three_prime_UTR	101218952	101218999	+

Transcript Sequence
>GWHTAAZE003632 ATGAGCCTAAATTCAATGAGGAAATCAATGGACATCAATTTCATTTTCTTGGCAATTTTCCTGCTTCAAATCCTTTTTTTGCAAGCAACCGGTGAACCCACTCAAGACAAACAAGCCTTGTTAGATTTTGTCCAAAATATCCACCACTTGCGTCCTCTTAATTGGGAATGGAACTCCTCTGCCTGCGTTAGCTGGATTGGAGTGACATGTAATCCCGATAAATCTGGAATTATAGCCCTCCGATTGCCTGCAGTTGGACTTCGCGGGCCCATCCCCTTCAATACCCTCAGCCGCTTATCGGCTATTCAGATCTTGAGTTTAAGATCCAATGCCATTTCTGGCACATTCCCTTCTGATTTTTCCAAGCTCAAAAACTTAACCAGCCTCTATCTTCAATCCAATCGCTTCTCGGGTTCGCTCCCATCAAACTTCTTGGCTTGGAAAAATCTATCGGTTCTCAATTTGTCGAACAATGCTTTTAATGGCAGTATCCCTTCTTCAATTTCAAATTTGACTCACCTCACAGCTTTAAATCTTTCCAACAACTCGCTCTCTGATGAAATTCCTGATCTCAATCTCCCTAGTCTGAAGTTGCTAGATATCTCGAACAATAATCTCACGGGAACTGTGCCACAATCTCTCCAAAGATTTCCTAGTTCAGCTTTCTCGGGTAATAATCTTTCACCTGAAAATTCACCTCCCCCAGTTCTTCCACCCAATGCTCAACCAACAAAGAAATCTTCAAAACTAGGTGAATCTGCGATCCTAGGAATCATAATTGGTGGGTGTGTTATGGGGTTTGTGATACTTTTCCTGCTGCTGATTCTTTGCTATTCAAACAAAGAAGCCGAAAATGGGGTCTCGGCTACAACCCAGACAGAAAAAAATGTAAAGAAATCGGTATCTGCGAGCCAAGAAAAGAATAACAGGCTTGTGTTTTTTGAGGGTATTAATGGGGCATTTGACTTGGACGATTTGTTAAGGGCTTCGGCTGAGGTGCTTGGGAAGGGAATTGGGATGACATACAAGGCAGCACTGGAGGATTCTACTGTACTCGCAGTAAAGAGATTGAAAGAACTTGGTGTAACGAGACGAGAATTTGAGCAACAGATGGAGGTTGTTGGGAGTATCAGGCACGAGAATGTGGCTCCCTTAAGAGCTTATTACTATTCGAAAGAGGAAAAGCTTATGGTATATGACTATTACAACCAGGGTAGTGTGTCTGTAATGTTACATTCAAAAAGAGGTGAAGGCCGAACTCCCCTAGACTGGGAAACCCGTGTAAGAATAGCAATTGGTGCAGCAAGAGGCATCGCCTATATCCACACACGAACAGGTGGAAAGCTAGTCCATGGAAACATAAAGGCCTCCAACATTTTCCTCAACTCCCAGCAACATGGTTGTGTATCCGATCTTGGCTTGGCAACTTTAATAAATCAAGTGATCCTACCAAACGCAAAAATCCCTGGATACCGAGCCCCAGAAGTGACAAACACGAGGAAACTGTCTCAAGCATCCGACGTATACAGCTATGGAGTCTTGCTGCTTGAGCTTCTCACCGGAAAGTCGCCAGTGAATTCCACTGGCGGAGATGAGGTTCTCCACTTGGTCAGATGGGTTAATTCAGTTATCAGAGAGGAATGGACTGCAGAAGTGTTTGATACAGAGCTTTTGAGGTATCCAAATATAGAAGAGGAGATGGTGGAGCTGCTGCAGATAGGGATGGCATGCGCGGCAAGAGTGGTAGAGCAGAGACCGAAGATGACTGATGTGGTGAAAATGGTGGAAGATATTCAAAGGATCAATACTGGAAACCGTCCTTCAACAGAAATTAAATCTGAACTTTCAACACCAACTCCGATACAGCTCACAGCAGCTGAGATAGTATCCTCCTCTATTCCATAATTATATTATTTTGCTAGAAATTAGTTGTGATATTCTCTTCTTCATTTT

Network for GWHGAAZE003626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	71	1.00E-06
PF13855.7	LRR_8	126	184	2.00E-08
PF00560.34	LRR_1	195	216	0.15
PF07714.18	PK_Tyr_Ser-Thr	334	593	4.10E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.440
	SRR3591706	second leaf	4.245
	SRR3591707	mature leaf	0.270
	SRR3591708	Shoot apex	5.638
	SRR3591709	Stem	2.591
	SRR3591710	White floral bud	5.465
	SRR3591711	White flower	2.022
	SRR3591712	Green floral bud	12.394
	SRR3591713	Yellow flower	0.376
SRP173429	SRR8316895	Juvenile bud stage	10.789
	SRR8316896	Juvenile bud stage	12.863
	SRR8316897	Juvenile bud stage	5.579
	SRR8316894	Third green stage	4.963
	SRR8316900	Third green stage	11.651
	SRR8316901	Third green stage	14.290
	SRR8316898	Complete white stage	2.628
	SRR8316899	Complete white stage	12.125
	SRR8316903	Complete white stage	4.877
	SRR8316902	Silver flowering stage	1.138
	SRR8316904	Silver flowering stage	2.188
	SRR8316905	Silver flowering stage	0.758
	SRR8316906	Gold flowering stage	1.778
	SRR8316907	Gold flowering stage	3.246
	SRR8316908	Gold flowering stage	2.202
SRP132670	SRR6706286	Control	9.891
	SRR6706287	Light intensity 50%	12.096
	SRR6706288	Light intensity 20%	12.749
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.069
	CNS0095593	Slightly white alabastrum(diploid) 2	9.033
	CNS0095594	Slightly white alabastrum(diploid) 3	6.864
	CNS0095595	Whole white alabastrum(diploid) 2	5.387
	CNS0095596	Whole white alabastrum(diploid) 3	4.455
	CNS0095597	Whole white alabastrum(diploid) 4	5.365
	CNS0095598	Silvery flower (diploied) 1	3.067
	CNS0095599	Silvery flower (diploied) 2	2.576
	CNS0095600	Silvery flower (diploied) 3	2.310
	CNS0095601	Golden flower (diploid) 1	1.658
	CNS0095602	Golden flower (diploid) 2	1.832
	CNS0095603	Golden flower (diploid) 3	1.724
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.354
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.844
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.182
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.387
	CNS0095610	Silvery flower (tetraploid) 1	2.076
	CNS0095611	Silvery flower (tetraploid) 2	2.906
	CNS0095612	Silvery flower (tetraploid) 3	10.711
	CNS0095613	Golden flower (tetraploid) 1	1.498
	CNS0095614	Golden flower (tetraploid) 2	1.325
	CNS0095615	Golden flower (tetraploid) 3	0.598
CRA001975	CRR073297	Stem 1	14.180
	CRR073298	Stem 2	13.442
	CRR073299	Stem 3	14.399
	CRR073300	Leaf 1	14.505
	CRR073301	Leaf 2	13.408
	CRR073302	Leaf 3	9.919
	CRR073303	Juvenile bud 1	8.487
	CRR073304	Juvenile bud 2	14.202
	CRR073305	Juvenile bud 3	11.035
	CRR073306	Third green 1	8.914
	CRR073307	Third green 2	4.078
	CRR073308	Third green 3	4.953
	CRR073309	Second white 1	0.300
	CRR073310	Second white 2	0.270
	CRR073311	Second white 3	0.615
	CRR073312	Silver flowering 1	0.298
	CRR073313	Silver flowering 2	0.109
	CRR073314	Silver flowering 3	0.505
	CRR073315	Gold flowering 1	5.152
	CRR073316	Gold flowering 2	8.691
	CRR073317	Gold flowering 3	4.255
	CRR073318	Tawny withering 1	23.417
	CRR073319	Tawny withering 2	15.243
	CRR073320	Tawny withering 3	29.640