Detail information of GWHGAAZE003590


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011076101.11.2661E-148PREDICTED: protein REVEILLE 6-like isoform X1 [Sesamum indicum]
Swissprottr|Q8H0W3|RVE6_ARATH2E-122Protein REVEILLE 6
trEMBLtr|F6H6C0|F6H6C0_VITVI9E-147Putative uncharacterized protein {ECO:0000313|EMBL:CCB47831.1}
TAIR10AT5G52660.27E-88Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100570358100582096-
GWHAAZE00000001mRNA100570358100582096-
GWHAAZE00000001exon100581864100582096-
GWHAAZE00000001exon100580555100580612-
GWHAAZE00000001exon100579349100579472-
GWHAAZE00000001exon100579088100579267-
GWHAAZE00000001exon100578861100578983-
GWHAAZE00000001exon100574928100575037-
GWHAAZE00000001exon100574705100574764-
GWHAAZE00000001exon100574005100574105-
GWHAAZE00000001exon100572243100572279-
GWHAAZE00000001exon100572126100572174-
GWHAAZE00000001exon100571724100572003-
GWHAAZE00000001exon100571492100571630-
GWHAAZE00000001exon100570358100570438-
GWHAAZE00000001CDS100581864100582096-
GWHAAZE00000001CDS100580555100580612-
GWHAAZE00000001CDS100579349100579472-
GWHAAZE00000001CDS100579088100579267-
GWHAAZE00000001CDS100578861100578983-
GWHAAZE00000001CDS100574928100575037-
GWHAAZE00000001CDS100574705100574764-
GWHAAZE00000001CDS100574005100574105-
GWHAAZE00000001CDS100572243100572279-
GWHAAZE00000001CDS100572126100572174-
GWHAAZE00000001CDS100571724100572003-
GWHAAZE00000001CDS100571492100571630-
GWHAAZE00000001CDS100570358100570438-
Transcript Sequence

Network for GWHGAAZE003590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding611057.90E-10
PF03501.16S10_plectin3444356.90E-42
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf204.253
SRR3591706second leaf92.676
SRR3591707mature leaf54.814
SRR3591708Shoot apex235.109
SRR3591709Stem120.794
SRR3591710White floral bud109.220
SRR3591711White flower132.461
SRR3591712Green floral bud179.432
SRR3591713Yellow flower104.108
SRP173429 SRR8316895Juvenile bud stage 94.607
SRR8316896Juvenile bud stage 125.698
SRR8316897Juvenile bud stage 65.597
SRR8316894Third green stage 57.288
SRR8316900Third green stage 170.831
SRR8316901Third green stage 169.135
SRR8316898Complete white stage 47.906
SRR8316899Complete white stage 169.446
SRR8316903Complete white stage 70.164
SRR8316902Silver flowering stage49.044
SRR8316904Silver flowering stage54.199
SRR8316905Silver flowering stage27.316
SRR8316906Gold flowering stage 76.516
SRR8316907Gold flowering stage 80.791
SRR8316908Gold flowering stage 91.814
SRP132670SRR6706286Control143.049
SRR6706287Light intensity 50%151.955
SRR6706288Light intensity 20%161.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1171.046
CNS0095593Slightly white alabastrum(diploid) 2193.586
CNS0095594Slightly white alabastrum(diploid) 3163.050
CNS0095595Whole white alabastrum(diploid) 2149.858
CNS0095596Whole white alabastrum(diploid) 3170.373
CNS0095597Whole white alabastrum(diploid) 4121.175
CNS0095598Silvery flower (diploied) 195.444
CNS0095599Silvery flower (diploied) 288.199
CNS0095600Silvery flower (diploied) 386.575
CNS0095601Golden flower (diploid) 172.598
CNS0095602Golden flower (diploid) 282.104
CNS0095603Golden flower (diploid) 380.094
CNS0095604Slightly white alabastrum(tetraploid) 1184.111
CNS0095605Slightly white alabastrum(tetraploid) 2177.091
CNS0095606Slightly white alabastrum(tetraploid) 3198.150
CNS0095607Whole white alabastrum(tetraploid) 1112.649
CNS0095608Whole white alabastrum(tetraploid) 289.434
CNS0095609Whole white alabastrum(tetraploid) 3154.755
CNS0095610Silvery flower (tetraploid) 190.255
CNS0095611Silvery flower (tetraploid) 289.047
CNS0095612Silvery flower (tetraploid) 372.839
CNS0095613Golden flower (tetraploid) 161.959
CNS0095614Golden flower (tetraploid) 279.344
CNS0095615Golden flower (tetraploid) 373.476
CRA001975CRR073297Stem 1180.417
CRR073298Stem 2179.203
CRR073299Stem 3240.525
CRR073300Leaf 1201.825
CRR073301Leaf 2221.736
CRR073302Leaf 3297.017
CRR073303Juvenile bud 1240.596
CRR073304Juvenile bud 2200.782
CRR073305Juvenile bud 3219.610
CRR073306Third green 166.420
CRR073307Third green 283.809
CRR073308Third green 377.800
CRR073309Second white 174.241
CRR073310Second white 267.393
CRR073311Second white 348.703
CRR073312Silver flowering 164.949
CRR073313Silver flowering 294.276
CRR073314Silver flowering 375.984
CRR073315Gold flowering 1112.239
CRR073316Gold flowering 2118.107
CRR073317Gold flowering 394.400
CRR073318Tawny withering 1217.355
CRR073319Tawny withering 2176.265
CRR073320Tawny withering 3207.907