Gene detail

Detail information of GWHGAAZE003588

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009607673.1	6.9817E-140	PREDICTED: probable serine/threonine-protein kinase At1g01540 [Nicotiana tomentosiformis]
COG	YP_007201433.1	3E-20	protein kinase family protein
Swissprot	tr\|Q3EDL4\|Y1154_ARATH	3E-125	Probable serine/threonine-protein kinase At1g01540
trEMBL	tr\|A0A068UBX7\|A0A068UBX7_COFCA	6E-135	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05143.1}
TAIR10	AT1G01540.2	4E-97	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100504816	100507827	-
GWHAAZE00000001	mRNA	100504816	100507827	-
GWHAAZE00000001	exon	100504816	100505067	-
GWHAAZE00000001	exon	100505148	100505289	-
GWHAAZE00000001	exon	100505379	100505549	-
GWHAAZE00000001	exon	100506756	100506878	-
GWHAAZE00000001	exon	100506964	100507065	-
GWHAAZE00000001	exon	100507271	100507827	-
GWHAAZE00000001	CDS	100507271	100507827	-
GWHAAZE00000001	CDS	100506964	100507065	-
GWHAAZE00000001	CDS	100506756	100506878	-
GWHAAZE00000001	CDS	100505379	100505549	-
GWHAAZE00000001	CDS	100505148	100505289	-
GWHAAZE00000001	CDS	100504816	100505067	-

Transcript Sequence
>GWHTAAZE003594 ATGTCTTCTGGTCTATTATCATCAATTACCACTAATCTGTCAAAGCGAACCTCATTCTTTGGTCAAAGTTTATTGACTGTAATCATATTTTGCATTGCATTATTTATTATTTTGGTTCTTTTCCTCTATGTTTCCTTCCTCACTTGGCACCGCAGCAAGCCAAGAAGAGTTTATTATGGCACAACAAATCCCAATATTTTCTCAAAGAAGTTATGCAGAAACACTACTGCGGCTTATAGTGCTTCCTCAATGGATAGGAGGCTTTTATCGCACGGGGATTTTGAAATGAACAATGAGATTTTCGATCGGTGGTCGAATCAGCTCGGTGGATCAAAGAATGACAGGGCAACCGATTTAGAGTCGGTGGCTAGGTGCCCCTCGCGAGTGTCTGTAGATGTAAGGGTGGGGAAAGAGTATGAACTGAGGGAAATAGAAGAGGCCACAAACGGGTTGGCTTATGAGAATGTGATTGGATGTGGAGATTATGGGGTGGTTTATTATGGGGTTTTGCTTGATCACACACCAGTTGCAGTGAAGAAGTTGGTAGGTAACTACAGTGGTGAAGTCGAGGAGTTCAGGGTAGAAGTGGAGTCTTTGTGGTGCATTAGGCACAAGAATCTAGTGAAGTTGCTTGGTTACTGTATCGGAGGAAGTTACAGGCTGCTAGTGTATGAGTACATGGAAAATGAGAGTCTTCAGCAGTGGCTTCATGGATATGTAGGGCAAGTTAGCCCTCTAACATGGAATATCCGTGTCAACATCATTATTGGAACTGCAAAGGGTTTGGCATACCTGCATGAGGATACCGAACCAGTAATTGTCCATGAACATATAAAATCGAGCAACATACTGCTCGATAGCCAGTGGAATCCTAAGATGTCAGATTTTGCTACTGCCAAGCTCTTCAGTCCTGGGGAGAGTAATGGCATGGCCGACCCTAAAGGAATGTCTGGTTATATTGCACCTGAATATGTGTATACGGGTACTTTTGACGAGAAGAGCGATGTTTATAGCTTTGGAATACTTATCATGGAGATCATATCTGGGAAGCCCCCTATGGGGTGCTTTGGAGCTGAGATAGAGGTTGCTGGTTCTGAGTACTTGATCGACTGGTTAAAATCGATGGTTACAAATCAAAATTTTGATCAAGTGGTGGATCCTAAGATGCCCGATGTGCCTTCTCTAAAGGAACTCAAAAGAATTATTCTGATTGCACTTCGATGCGTTGATATGTATGTTGAAAATAGGCCTAAAATGGGAGATGTGATCCACATGCTTGAACCGCGTGACTTGCTACTCTGTGATGTAAGAACTATTTTTTCTCCGTGCCTTTCTATTTTCGCTTAA

Network for GWHGAAZE003588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	153	426	1.30E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.523
	SRR3591706	second leaf	0.311
	SRR3591707	mature leaf	0.101
	SRR3591708	Shoot apex	0.482
	SRR3591709	Stem	1.667
	SRR3591710	White floral bud	2.280
	SRR3591711	White flower	1.733
	SRR3591712	Green floral bud	1.126
	SRR3591713	Yellow flower	2.729
SRP173429	SRR8316895	Juvenile bud stage	5.897
	SRR8316896	Juvenile bud stage	4.457
	SRR8316897	Juvenile bud stage	1.100
	SRR8316894	Third green stage	0.659
	SRR8316900	Third green stage	0.806
	SRR8316901	Third green stage	0.934
	SRR8316898	Complete white stage	1.342
	SRR8316899	Complete white stage	0.770
	SRR8316903	Complete white stage	1.962
	SRR8316902	Silver flowering stage	0.350
	SRR8316904	Silver flowering stage	0.607
	SRR8316905	Silver flowering stage	0.301
	SRR8316906	Gold flowering stage	1.288
	SRR8316907	Gold flowering stage	1.404
	SRR8316908	Gold flowering stage	0.417
SRP132670	SRR6706286	Control	0.494
	SRR6706287	Light intensity 50%	1.002
	SRR6706288	Light intensity 20%	0.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.923
	CNS0095593	Slightly white alabastrum(diploid) 2	1.116
	CNS0095594	Slightly white alabastrum(diploid) 3	2.593
	CNS0095595	Whole white alabastrum(diploid) 2	0.570
	CNS0095596	Whole white alabastrum(diploid) 3	0.656
	CNS0095597	Whole white alabastrum(diploid) 4	0.605
	CNS0095598	Silvery flower (diploied) 1	0.141
	CNS0095599	Silvery flower (diploied) 2	0.051
	CNS0095600	Silvery flower (diploied) 3	0.657
	CNS0095601	Golden flower (diploid) 1	0.183
	CNS0095602	Golden flower (diploid) 2	0.732
	CNS0095603	Golden flower (diploid) 3	0.413
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.007
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.248
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.623
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.132
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.258
	CNS0095610	Silvery flower (tetraploid) 1	0.514
	CNS0095611	Silvery flower (tetraploid) 2	0.468
	CNS0095612	Silvery flower (tetraploid) 3	0.572
	CNS0095613	Golden flower (tetraploid) 1	0.216
	CNS0095614	Golden flower (tetraploid) 2	0.642
	CNS0095615	Golden flower (tetraploid) 3	1.857
CRA001975	CRR073297	Stem 1	2.624
	CRR073298	Stem 2	1.494
	CRR073299	Stem 3	2.737
	CRR073300	Leaf 1	0.972
	CRR073301	Leaf 2	0.700
	CRR073302	Leaf 3	0.397
	CRR073303	Juvenile bud 1	0.052
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.053
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.059
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.005
	CRR073313	Silver flowering 2	0.004
	CRR073314	Silver flowering 3	0.135
	CRR073315	Gold flowering 1	0.034
	CRR073316	Gold flowering 2	0.039
	CRR073317	Gold flowering 3	0.097
	CRR073318	Tawny withering 1	0.089
	CRR073319	Tawny withering 2	0.280
	CRR073320	Tawny withering 3	0.000