Gene detail

Detail information of GWHGAAZE003582

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05150.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FLW0\|Y5241_ARATH	0	Probable receptor-like protein kinase At5g24010 (Precursor)
trEMBL	tr\|A0A068U9B2\|A0A068U9B2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05150.1}
TAIR10	AT5G24010.1	3E-174	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100428475	100430970	+
GWHAAZE00000001	mRNA	100428475	100430970	+
GWHAAZE00000001	exon	100428475	100430143	+
GWHAAZE00000001	exon	100430537	100430970	+
GWHAAZE00000001	CDS	100428475	100430143	+
GWHAAZE00000001	CDS	100430537	100430970	+

Transcript Sequence
>GWHTAAZE003588 ATGGGTACCAGAATTCTTCAGTTTCTTTTTCTAATTCACTTCTTCTCACTTCTCCACTTCTCGACATCTTTCACACCACAAAACAACTACCTCATTAACTGTGGATCCAACACAAACATTACTGTTGATAACAGGCACTTTGTGGGGGATTCAACCAAACTCGGTTCGGTTTATCTTTCTGCAGGTGAATCAATCTCTCTCACAAACCCAAAACCAAACACAAACCCATCAAATCTGTCTGTGCTTTACAACACTGCCAGGGTTTTCACAAGTGCCTCAGGCTATTCTTTCAGCATGAAGAAATTTGGGACCCACTTGGTACGTTTCCATTTCTCTCCTTTCAACTCTCGGAATTACAATCTCCAGAATGCAAATTTCAGTGTTTCGTGTAATGGGTTTTCGCTTTTTATCAATTTTGCTGCCAATGTTACTGTTGTTAAAGAGTTCCTATTGAGAGTAGATAAGGTAGATTTTGAAATATTGTTTAGCCCAGTGGAGGAATCTGGTTTTGCATTTGTTAGTGCAATTGAAGTGTTTTCAGCTCCCGATGATCTCATTCTTGAGAATGGAGCTAAATTGATTGGAGCTGATGGAATTGAAGAGTTTAAGGACCTTACTTCACAAATTTTAGAGACTGTTCATAGGATCAATGTTGGAGGTCCAAAGCTGACCTCTTTCAATGATACCCTTTGGAGGACTTGGGTCCCTGATGAGGAATTTCTTCTTTTAAAATCTGCTGCAAAAATTGTGAGTTCTACTCTTGCCCCAAATTATCAAAACGGAGGTGCTAGCGAAGAGATTGCCCCGGGTAATGTCTACATGACTGCACAAGAGATGAATAGGGACAACATGACAGAATACTCTAAGTTCAATATAACATGGGATTTTCCAGTTGGATTGGGGCGTGTTCGACACTTCGTTCGTCTTCATTTCTGTGACATTGTTAGTCTTTCACTTAACCAGCTGTATTTTGATGTATATATAAACGAGTTCCTTGCTTACAAAGACCTCGATCTTTCTGCGCTTACATTCCATTTGCTTGCATCTCCTTACTACATAGATTTGGTTGTGGACTCGGATAATTCTGGGGTTGTGCAGATAAGCGTCGGCCCTTCTGATCTTAGTAGTCCTTTGAGAAAGAATGCAATTTTGAATGGTGTAGAGATAATGAAGATTGTAAATTTTGTGGCTCCAGAAATCAGTCCTAAGAAGAAAAGTATTTGGGTTTTGGCGGGTTCAATTGTAGGAGGTTTTCTTGCTTTGTCTTTTGCAATTCTTGCAGTTTTAATGCTATTGAGATGCAGGAAGACAAAAGCAAAGCTGAAACCTGCAGAAAGTATGGGTTGGACACCTTTATGTGCTTATGGGGGCAGTTCGCACAGTAAACTCTCTGAAGGGACTGCCTTGGCTTCACCAGGCTCGAACGGGTATCTTGGCTTAAAGATTCCTTTTAGTGATTTACAATCAGGAACAAATAATTTCGACAAGAATCTGATTATTGGCTCTGGGGGATTCGGTATAGTTTACAAAGGGGTTCTTAAAGACAGCACGAAGGTTGCAGTGAAGCGAGGTGTACCAGGTTCCAGGCAGGGGCTCCCGGAGTTCCAGACAGAAATTACAGTTCTATCAAAAATTCGCCATCGGCATCTTGTTTCTCTTGTTGGGTACTTTCTTTGTGCTCGGCCTGCTGTTGACCCGTTGCTCACTAGAGAGCAGGTGAATTTGGGAGAGTGGGCATTGCAATGGCAAAAGAAGGGTCTTCTTGAGCAAATCGTTGATCCCCATCTTGTGGGTAAGATAAACCCAAGCTCTTTGAAAAAAATCGGGGAAACGGCAGAAAAATGTTTGGCTGAATACGGTGTGGATAGGCCAACAATGGGCGATGTGTTATGGAATTTGGAATATGCGCTTCAGCTACAGGAAAATGGAAGGGAGAGAGAACCACATGAAGATAGTGATATCACTGCATCGGAGCTTGCAATACCTAGAGTTGTGCCAAGAGTGCCCTTGAGCAACTCTAGGATTGAAGATAATGGTGAAGGGACTTCATACTTGAGATCAAGCCAAGTTTTTTCCCAGTTGATGACCAATGAAGGTAGATAG

Network for GWHGAAZE003582

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	32	392	6.30E-34
PF07714.18	PK_Tyr_Ser-Thr	499	562	3.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.062
	SRR3591706	second leaf	3.446
	SRR3591707	mature leaf	2.451
	SRR3591708	Shoot apex	5.036
	SRR3591709	Stem	13.828
	SRR3591710	White floral bud	12.746
	SRR3591711	White flower	9.515
	SRR3591712	Green floral bud	10.243
	SRR3591713	Yellow flower	5.810
SRP173429	SRR8316895	Juvenile bud stage	7.323
	SRR8316896	Juvenile bud stage	7.539
	SRR8316897	Juvenile bud stage	2.836
	SRR8316894	Third green stage	3.826
	SRR8316900	Third green stage	12.040
	SRR8316901	Third green stage	10.137
	SRR8316898	Complete white stage	7.288
	SRR8316899	Complete white stage	19.929
	SRR8316903	Complete white stage	12.376
	SRR8316902	Silver flowering stage	4.507
	SRR8316904	Silver flowering stage	5.450
	SRR8316905	Silver flowering stage	2.317
	SRR8316906	Gold flowering stage	3.850
	SRR8316907	Gold flowering stage	5.114
	SRR8316908	Gold flowering stage	5.158
SRP132670	SRR6706286	Control	10.528
	SRR6706287	Light intensity 50%	12.044
	SRR6706288	Light intensity 20%	13.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.277
	CNS0095593	Slightly white alabastrum(diploid) 2	8.283
	CNS0095594	Slightly white alabastrum(diploid) 3	5.817
	CNS0095595	Whole white alabastrum(diploid) 2	6.158
	CNS0095596	Whole white alabastrum(diploid) 3	5.216
	CNS0095597	Whole white alabastrum(diploid) 4	6.220
	CNS0095598	Silvery flower (diploied) 1	11.486
	CNS0095599	Silvery flower (diploied) 2	7.530
	CNS0095600	Silvery flower (diploied) 3	13.644
	CNS0095601	Golden flower (diploid) 1	7.899
	CNS0095602	Golden flower (diploid) 2	9.993
	CNS0095603	Golden flower (diploid) 3	10.663
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.257
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.363
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.274
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.458
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.475
	CNS0095610	Silvery flower (tetraploid) 1	8.499
	CNS0095611	Silvery flower (tetraploid) 2	8.034
	CNS0095612	Silvery flower (tetraploid) 3	6.376
	CNS0095613	Golden flower (tetraploid) 1	1.802
	CNS0095614	Golden flower (tetraploid) 2	4.995
	CNS0095615	Golden flower (tetraploid) 3	1.615
CRA001975	CRR073297	Stem 1	9.072
	CRR073298	Stem 2	9.346
	CRR073299	Stem 3	9.583
	CRR073300	Leaf 1	10.462
	CRR073301	Leaf 2	10.721
	CRR073302	Leaf 3	9.588
	CRR073303	Juvenile bud 1	11.014
	CRR073304	Juvenile bud 2	12.088
	CRR073305	Juvenile bud 3	18.863
	CRR073306	Third green 1	5.345
	CRR073307	Third green 2	5.362
	CRR073308	Third green 3	7.348
	CRR073309	Second white 1	1.241
	CRR073310	Second white 2	1.153
	CRR073311	Second white 3	0.887
	CRR073312	Silver flowering 1	0.481
	CRR073313	Silver flowering 2	0.499
	CRR073314	Silver flowering 3	0.278
	CRR073315	Gold flowering 1	9.261
	CRR073316	Gold flowering 2	13.749
	CRR073317	Gold flowering 3	7.740
	CRR073318	Tawny withering 1	14.219
	CRR073319	Tawny withering 2	11.862
	CRR073320	Tawny withering 3	20.322