Gene detail

Detail information of GWHGAAZE003573

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007038672.1	2.47444E-68	Myb domain protein 18, putative [Theobroma cacao]
Swissprot	tr\|Q9M0K4\|LAF1_ARATH	6E-43	Transcription factor LAF1
trEMBL	tr\|A0A061G1E1\|A0A061G1E1_THECC	9E-69	Myb domain protein 18, putative {ECO:0000313\|EMBL:EOY23173.1}
TAIR10	AT4G25560.1	1E-36	myb domain protein 18

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100272898	100276257	-
GWHAAZE00000001	mRNA	100272898	100276257	-
GWHAAZE00000001	exon	100276212	100276257	-
GWHAAZE00000001	exon	100273659	100273788	-
GWHAAZE00000001	exon	100272898	100273498	-
GWHAAZE00000001	CDS	100276212	100276257	-
GWHAAZE00000001	CDS	100273659	100273788	-
GWHAAZE00000001	CDS	100272898	100273498	-

Transcript Sequence
>GWHTAAZE003579 ATGGAGCATGGCCTTACCTGCTGGAGCTCCGTCCCCATTAACGCCGGTTTGCAAAGGAATGGAAAGAGTTGTAGATTGAGGTGGATTAATTATCTACGGCCTGGATTAAAGCGCGGCATGTTTACTATTCAAGAGGAACAAACCATCCTCACCCTTCGTTCCATGTTAGGCAACAAGTGGTCACAGATGGCACACTGTTTGCCTGGAAGGACAGATAACGAGGTAAAAAATTACTGGCACTCTCATCTGAAGAAGAAAGTAACTGCAATTGACAATAACGTTGATTACGCGATTTCAAACATGGACAATATAATTGAATGTTCTTCATCTTCTTCCCTCAAGTCGATTACACAAAACCCGAGTTTCAATTCATTTGAACGCACGGAAGGATCCTTAACAACCACAATTGATATTCTTCCATTGGTCCCACAAGTTTTTAACTCTCCAAAAGAAGATGGGCTTAGCAACTTGCCCAAGCTTTTATTTTCAGATTGGCTTTCCATGGATCAATTTCGAGGCCATCATGAATTTGACATTAATCCACCAATTGAGCCATATCTTTCTAAGGATGCTGTTGGTGGTCAGTATTATCATGAGTTTCAGGGTAGTTTCATCAGTGGTGAATTATTGAACGATGGGTCGTTTGTTAGCGATGAAATTAATCAACAAGCGCCAAGCAATAGTTCAGCTGAAAATGCATTTCATTCGCAGCTCAAATTCAGTGATGAATTTTGTGACGGTGGATGTGTTGGTTTTGGGTATCGGGATAACTTGTGA

Network for GWHGAAZE003573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	38	83	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.127
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.098
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.112
	SRR8316894	Third green stage	0.073
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.004
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.106
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.004
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.014
	CNS0095602	Golden flower (diploid) 2	0.004
	CNS0095603	Golden flower (diploid) 3	0.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.037
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.174
	CNS0095614	Golden flower (tetraploid) 2	0.081
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.004
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.010
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.010
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.008
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.026
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.006
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.005
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.255
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	1.208