Gene detail

Detail information of GWHGAAZE003567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002322482.1	0	hypothetical protein POPTR_0015s12870g [Populus trichocarpa]
COG	YP_846649.1	3E-27	serine/threonin protein kinase
Swissprot	tr\|Q9CAD5\|YODA_ARATH	0	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|B9IDA8\|B9IDA8_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF06609.1}
TAIR10	AT1G63700.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100180384	100184895	-
GWHAAZE00000001	mRNA	100180384	100184895	-
GWHAAZE00000001	exon	100180384	100180816	-
GWHAAZE00000001	exon	100180943	100181022	-
GWHAAZE00000001	exon	100181292	100181528	-
GWHAAZE00000001	exon	100181735	100181842	-
GWHAAZE00000001	exon	100181972	100182031	-
GWHAAZE00000001	exon	100182241	100182316	-
GWHAAZE00000001	exon	100182444	100182604	-
GWHAAZE00000001	exon	100182841	100182903	-
GWHAAZE00000001	exon	100183041	100183128	-
GWHAAZE00000001	exon	100183424	100184167	-
GWHAAZE00000001	exon	100184339	100184895	-
GWHAAZE00000001	CDS	100184339	100184895	-
GWHAAZE00000001	CDS	100183424	100184167	-
GWHAAZE00000001	CDS	100183041	100183128	-
GWHAAZE00000001	CDS	100182841	100182903	-
GWHAAZE00000001	CDS	100182444	100182604	-
GWHAAZE00000001	CDS	100182241	100182316	-
GWHAAZE00000001	CDS	100181972	100182031	-
GWHAAZE00000001	CDS	100181735	100181842	-
GWHAAZE00000001	CDS	100181292	100181528	-
GWHAAZE00000001	CDS	100180943	100181022	-
GWHAAZE00000001	CDS	100180384	100180816	-

Transcript Sequence
>GWHTAAZE003573 ATGCCTTCATGGTGGGCGAAGTCATCGTCAAAAGACACGAAGAAGAAAGCAAGCAAGGAGAGTATCTTTGACACATTACACCGAAAATTTAAGATCCCATCTGAGGGTAAATCTTCCAATAGATCATCTGAATCTCGAGGACGTGGTAGTGATACATTTTCAGTGAAGGAGTCTCTGTCCCGAGTAGTATCAAGGTCACCATCACCTTCTAAAAACGTATCAAGATGTCAAAGCTTTGTTGAAAGGCCTCATGCCCAACCACTTCCACTTCCAGATTTGCACCCTGCTGGTCTGGCTCGTACTGATTCTGGACTCTGCGTATCTGCAAAAGGTAGATTGCGAAAGGGATCCCAACAGTCATTGTTTTTACCCCTCCCAAAACCTGGATGCATTCGAAACACCGCGGATCTTGCAGATTTAGATGGAGATTTGGTGAATGCTTCTATTTCTAGTGAATACTCCATTGATAGTGATGATCAAGCTGATTCACGCCAGCGTAGTCCCCTTACATCTGATTATGAAACTGGTAGTAGAACAACTGCAGGAAGCCCTTCAAGCATGATGGTTAAGGGTCAGTCACCTGTCGCGCAGATAAATTCAAGGGAAGCTCTAAAACCAGGAAATCTTATCTTCAATAATCATCTTTCTCCTTCACCTCCTAAAAGGAGATTGAGCAATCATGTACCAAATCTACAGGTCCCTTACCATGGTGCATTCTGCAGTGCTCCAGACAGCTCAATGTCGAGTCCTTCTAGAAGTCCATTGAGAGCGTTTGGCAACGAGCAAGTTATAAATTCTGCTTTCTGGGCTGGAAAGCCTTATCCAGATCTTCCTTTTCTTGGATCCGGTCAATGCTCCAGTCCAGGGTCGGGTCAGAATTCTGGTCATAATTCAATGGGCGGTGATATGTCTGGACAGTTATTTTGGCAGCAGCCTAGCCGGGGTAGCCCAGAGTATTCTCCACTTCCTAGCCCTAGAATGACTAGCCCTGGCCCTAGCTCTAGAATTAACAGTGGTGCTGTGACACCGCTACATCCAAGAGCTGGAGGAGGGGCAGCCACAGAATCACAGCAGAACAGCTGGCCTGATGATGGGAAACAACAAAGTCACCGGTTGCCCCTCCCTCCCATAACAGTTTCCAATTGTTCCCCTTTCTCCCATTCAAATTCAGCAGCTACATCTCCCTCTGTACCACGAAGTCCAGGAAGGGCAGATAATCCAACAAGCCCTAGTTCACGCTGGAAAAAGGGGAAGTTGCTGGGTAGAGGCTCATTTGGACATGTTTATGTTGGCTTCAACAGTGAAAGCGGGGAAATGTGTGCTATGAAGGAGGTTACATTATGCGCGGATGATGCAAAGTCAAAGGAGAGTGCAAAGCAGTTGGGACAAGAAATTGTTTTGCTGAGCCGCTTACGGCATCCAAATATTGTGCAGTATTATGGGTCTGAAACGGTGGATGATAAACTTTATATATATTTGGAATACGTTTCTGGCGGTTCCATCTACAAGCTTCTGCAAGAATATGGTCAATTTGGTGAATTGGCCATACGTAGTTATACTCACCAAATATTGTCTGGGCTTGCATATTTACACGCTAAAAGGACTCTCCATAGGGATATTAAAGGAGCAAATATCCTTGTTGACCCAAATGGCCGTGTCAAGTTGGCTGATTTTGGAATGGCAAAACATATCACGGGCCAGGCATGTCCGTTATCATTCAAAGGAAGCCCTTACTGGATGGCACCTGAGGTTATAAAGAATACAAATGGTTGCCACCTTGCTGTTGACATATGGAGTCTTGGATGCACCGTTTTAGAGATGGCCACGACAAAACCACCTTGGAGCCAATACGAAGGGGTTGCTGCAATGTTTAAGATTGGGAACAGTAAAGAACTCCCTGCAATTCCCGATCACTTGTCAGAGGATGGAAAGGATTTTGTGAGAAAGTGTTTGCAGCGGAATCCAATGAATCGTCCTACCGCCACTCAGCTTTTGGAGCACCGTTTTGTGAAAAATGCTGCACCTCTGGAAAGACCAATTATAGGTTCTGAGCCTTCAGATCCTCCTGGCATTACAAATGGAGTAAAATCTCTGGGCATCGGGCAGATGAGAAATCGTCCAACCCTGGAGTCAGAAGGGCTTGCAATCCATTCCTCTAGAGTTTCAAAATCTGGTGATATCCATATTCCAAGGAATGTATCATGCCCAGTCTCTCCAATTGGTAGCCCTCTTTTACATCCAAGGTCACCACAACACAGCAATGGGAGAATGTCTCCGTCACCTATATCTAGCCCTCGTACCACTTCAGGTTCATCCAGCCCTCTCACAAGCGGCAGTGGTGCTATCCCATTTCATCATCACCTTAATAATCACTCTGTTTACTTGCAAGAGTTTCCAAAATCTCCACGCAGTCCCTACGTCAATGGCACCTCTTATCTTGATCCTAATCCCGACATTTTTGCTCTTGGAAAGCCTGCTCAAGGAGAAACTTACAATGGACAGTCAGTGTTGGCTGATTGTGTGTCTCACCAACTCTTGAGGGATCATGTGAACTTGAAACCGTCCGTTGATCTGAATCCACGCTCTCCATCGCGGGGCCTAAGATAA

Network for GWHGAAZE003567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	415	670	2.90E-71

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20717	YDA	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.247
	SRR3591706	second leaf	13.744
	SRR3591707	mature leaf	11.700
	SRR3591708	Shoot apex	16.213
	SRR3591709	Stem	16.511
	SRR3591710	White floral bud	13.128
	SRR3591711	White flower	15.539
	SRR3591712	Green floral bud	17.310
	SRR3591713	Yellow flower	6.277
SRP173429	SRR8316895	Juvenile bud stage	9.661
	SRR8316896	Juvenile bud stage	10.678
	SRR8316897	Juvenile bud stage	5.105
	SRR8316894	Third green stage	4.900
	SRR8316900	Third green stage	13.514
	SRR8316901	Third green stage	12.739
	SRR8316898	Complete white stage	3.763
	SRR8316899	Complete white stage	16.949
	SRR8316903	Complete white stage	10.981
	SRR8316902	Silver flowering stage	3.823
	SRR8316904	Silver flowering stage	8.228
	SRR8316905	Silver flowering stage	3.503
	SRR8316906	Gold flowering stage	9.644
	SRR8316907	Gold flowering stage	8.199
	SRR8316908	Gold flowering stage	10.350
SRP132670	SRR6706286	Control	14.358
	SRR6706287	Light intensity 50%	14.961
	SRR6706288	Light intensity 20%	15.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.679
	CNS0095593	Slightly white alabastrum(diploid) 2	6.045
	CNS0095594	Slightly white alabastrum(diploid) 3	4.852
	CNS0095595	Whole white alabastrum(diploid) 2	5.074
	CNS0095596	Whole white alabastrum(diploid) 3	2.927
	CNS0095597	Whole white alabastrum(diploid) 4	3.957
	CNS0095598	Silvery flower (diploied) 1	8.451
	CNS0095599	Silvery flower (diploied) 2	5.716
	CNS0095600	Silvery flower (diploied) 3	14.349
	CNS0095601	Golden flower (diploid) 1	5.683
	CNS0095602	Golden flower (diploid) 2	9.936
	CNS0095603	Golden flower (diploid) 3	8.723
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.461
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.694
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.676
	CNS0095610	Silvery flower (tetraploid) 1	11.410
	CNS0095611	Silvery flower (tetraploid) 2	13.837
	CNS0095612	Silvery flower (tetraploid) 3	11.048
	CNS0095613	Golden flower (tetraploid) 1	2.678
	CNS0095614	Golden flower (tetraploid) 2	7.668
	CNS0095615	Golden flower (tetraploid) 3	4.930
CRA001975	CRR073297	Stem 1	18.045
	CRR073298	Stem 2	18.388
	CRR073299	Stem 3	13.304
	CRR073300	Leaf 1	19.460
	CRR073301	Leaf 2	18.820
	CRR073302	Leaf 3	11.527
	CRR073303	Juvenile bud 1	11.869
	CRR073304	Juvenile bud 2	10.374
	CRR073305	Juvenile bud 3	17.958
	CRR073306	Third green 1	7.344
	CRR073307	Third green 2	4.413
	CRR073308	Third green 3	6.858
	CRR073309	Second white 1	4.103
	CRR073310	Second white 2	4.243
	CRR073311	Second white 3	3.542
	CRR073312	Silver flowering 1	1.083
	CRR073313	Silver flowering 2	1.251
	CRR073314	Silver flowering 3	1.581
	CRR073315	Gold flowering 1	4.741
	CRR073316	Gold flowering 2	10.430
	CRR073317	Gold flowering 3	5.085
	CRR073318	Tawny withering 1	13.539
	CRR073319	Tawny withering 2	8.078
	CRR073320	Tawny withering 3	14.300